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OPENSEQ.org

EAMA - YDFH
UniProt: P31125 - P0ACM2
Length: 527
Sequences: 1106
Seq/Len: 2.25
I_Prob: 0.00

EAMA - Probable amino-acid metabolite efflux pump
Paralog alert: 0.83 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: EAMA RHTA YDDG YEDA YHBE YICL YIJE YTFF
YDFH - Uncharacterized HTH-type transcriptional regulator YdfH
Paralog alert: 0.80 [within 20: 0.20] - ratio of genomes with paralogs
Cluster includes: CSIR DGOR EXUR FADR GLCC LLDR MCBR NANR PDHR UXUR YDFH YIEP
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
49_F 23_R 0.82 0.00
47_A 65_I 0.75 0.00
151_A 178_E 0.74 0.00
51_V 194_R 0.74 0.00
187_I 41_V 0.73 0.00
279_M 207_L 0.71 0.00
283_Y 122_I 0.70 0.00
125_F 188_F 0.67 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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