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OPENSEQ.org

PHNH - PHNL
UniProt: P16686 - P16679
Length: 420
Sequences: 258
Seq/Len: 0.62
I_Prob: 0.01

PHNH - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: PHNH
PHNL - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL
Paralog alert: 0.94 [within 20: 0.86] - ratio of genomes with paralogs
Cluster includes: ARTP BTUD CCMA CYSA DDPD DDPF DPPD DPPF FBPC FECE FEPC FHUC FTSE GLNQ GLTL HISP LIVF LIVG LOLD LPTB MALK METN MLAF MODC NIKD NIKE OPPD OPPF PHNC PHNK PHNL POTA POTG PROV PSTB SAPD SAPF SSUB SUFC TAUB THIQ UGPC YADG YBBA YBBL YCJV YDCT YECC YEHX YHDZ YNJD ZNUC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
155_E 54_L 1.64 0.01
106_L 192_I 1.24 0.00
86_V 8_S 1.20 0.00
15_Q 93_G 1.15 0.00
3_L 26_R 1.12 0.00
124_I 7_V 1.12 0.00
15_Q 212_R 1.10 0.00
118_E 210_A 1.09 0.00
52_L 216_A 1.07 0.00
14_A 54_L 1.07 0.00
99_E 4_V 1.06 0.00
22_L 219_L 1.05 0.00
34_L 201_A 1.05 0.00
178_C 223_G 1.03 0.00
76_S 10_T 1.01 0.00
151_P 48_S 1.01 0.00
22_L 155_Q 1.01 0.00
47_A 172_L 1.01 0.00
22_L 216_A 1.00 0.00
125_L 98_F 1.00 0.00
78_R 223_G 0.97 0.00
119_A 199_G 0.97 0.00
2_T 7_V 0.96 0.00
26_S 146_A 0.96 0.00
150_A 198_R 0.95 0.00
8_M 54_L 0.95 0.00
188_T 52_R 0.94 0.00
125_L 155_Q 0.93 0.00
25_M 199_G 0.93 0.00
188_T 28_S 0.92 0.00
17_S 18_G 0.92 0.00
193_V 39_L 0.92 0.00
124_I 10_T 0.91 0.00
74_N 27_A 0.90 0.00
51_V 125_C 0.90 0.00
76_S 96_S 0.89 0.00
26_S 194_E 0.88 0.00
164_R 203_V 0.88 0.00
177_T 4_V 0.88 0.00
72_I 109_E 0.86 0.00
62_V 148_S 0.86 0.00
22_L 104_R 0.84 0.00
113_T 18_G 0.84 0.00
125_L 30_T 0.83 0.00
59_D 109_E 0.83 0.00
74_N 217_D 0.83 0.00
109_L 112_M 0.83 0.00
121_A 39_L 0.82 0.00
103_S 54_L 0.82 0.00
39_R 26_R 0.82 0.00
25_M 204_G 0.82 0.00
188_T 202_I 0.82 0.00
116_A 210_A 0.81 0.00
149_I 199_G 0.81 0.00
184_A 61_D 0.81 0.00
176_L 66_Q 0.81 0.00
81_T 56_A 0.81 0.00
32_V 203_V 0.81 0.00
41_W 199_G 0.81 0.00
69_N 6_N 0.81 0.00
6_A 199_G 0.80 0.00
149_I 210_A 0.80 0.00
56_A 167_D 0.80 0.00
129_S 127_A 0.79 0.00
54_T 6_N 0.79 0.00
172_I 84_V 0.79 0.00
26_S 131_R 0.79 0.00
121_A 67_I 0.78 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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