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OPENSEQ.org

YJIP - Putative uncharacterized protein YjiP
UniProt: P39387 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12577
Length: 306 (293)
Sequences: 521
Seq/Len: 1.78

YJIP
Paralog alert: 0.89 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: YADD YFAD YFCI YHGA YJIP
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
84_Q 94_R 2.983 1.00
273_D 276_W 2.812 1.00
256_Y 260_E 2.787 1.00
264_L 283_L 2.662 1.00
46_K 67_S 2.598 1.00
264_L 281_T 2.514 1.00
283_L 291_L 2.472 1.00
270_N 279_K 2.375 1.00
248_A 251_I 2.25 1.00
271_G 281_T 2.14 0.99
264_L 267_L 2.128 0.99
84_Q 91_M 2.009 0.99
252_H 258_K 1.98 0.99
278_Q 288_M 1.978 0.99
284_S 287_Q 1.922 0.98
277_I 281_T 1.889 0.98
264_L 271_G 1.86 0.98
103_M 118_V 1.783 0.97
266_L 282_G 1.781 0.97
271_G 277_I 1.755 0.96
91_M 94_R 1.753 0.96
277_I 283_L 1.75 0.96
271_G 283_L 1.697 0.95
67_S 74_D 1.69 0.95
96_M 100_M 1.685 0.95
52_F 65_L 1.63 0.94
287_Q 290_A 1.623 0.93
266_L 279_K 1.617 0.93
134_S 139_D 1.617 0.93
264_L 277_I 1.557 0.91
275_E 285_A 1.55 0.91
263_I 267_L 1.539 0.91
267_L 281_T 1.521 0.90
65_L 102_V 1.516 0.90
51_S 80_V 1.51 0.90
267_L 272_A 1.504 0.89
266_L 270_N 1.494 0.89
272_A 276_W 1.478 0.88
277_I 288_M 1.463 0.88
21_P 66_W 1.459 0.87
262_R 270_N 1.446 0.87
271_G 288_M 1.437 0.86
266_L 293_Q 1.434 0.86
263_I 281_T 1.42 0.85
278_Q 290_A 1.417 0.85
90_H 140_E 1.415 0.85
265_R 281_T 1.414 0.85
281_T 288_M 1.399 0.84
14_F 83_H 1.372 0.83
267_L 280_I 1.358 0.82
266_L 276_W 1.352 0.81
10_H 14_F 1.335 0.80
285_A 289_Q 1.335 0.80
272_A 280_I 1.331 0.80
11_D 15_K 1.319 0.79
24_A 32_L 1.301 0.78
179_L 182_K 1.267 0.75
277_I 289_Q 1.267 0.75
269_Q 273_D 1.257 0.74
70_T 73_G 1.255 0.74
164_P 167_E 1.25 0.74
65_L 123_F 1.233 0.72
278_Q 285_A 1.233 0.72
252_H 257_I 1.223 0.72
101_A 104_Q 1.221 0.71
276_W 279_K 1.219 0.71
268_L 271_G 1.218 0.71
263_I 282_G 1.214 0.71
264_L 291_L 1.209 0.70
103_M 137_W 1.201 0.70
273_D 288_M 1.2 0.69
274_P 277_I 1.192 0.69
281_T 287_Q 1.185 0.68
264_L 287_Q 1.183 0.68
272_A 279_K 1.18 0.68
222_D 250_R 1.177 0.67
246_T 249_E 1.171 0.67
275_E 279_K 1.17 0.67
270_N 276_W 1.164 0.66
281_T 291_L 1.161 0.66
268_L 291_L 1.159 0.66
289_Q 292_R 1.155 0.65
124_Y 159_D 1.153 0.65
277_I 282_G 1.148 0.64
277_I 287_Q 1.145 0.64
99_S 118_V 1.136 0.63
274_P 288_M 1.134 0.63
15_K 128_R 1.13 0.63
242_E 245_M 1.128 0.62
272_A 278_Q 1.127 0.62
257_I 261_Q 1.122 0.62
21_P 64_I 1.116 0.61
13_L 84_Q 1.115 0.61
84_Q 106_H 1.112 0.61
23_T 166_D 1.111 0.61
104_Q 108_E 1.11 0.61
99_S 120_P 1.109 0.61
231_S 234_T 1.108 0.60
284_S 289_Q 1.108 0.60
213_L 229_F 1.095 0.59
119_I 156_P 1.091 0.59
86_R 94_R 1.09 0.59
65_L 165_D 1.087 0.58
254_D 258_K 1.082 0.58
133_W 155_F 1.082 0.58
173_R 176_L 1.077 0.57
270_N 280_I 1.076 0.57
84_Q 125_H 1.074 0.57
83_H 125_H 1.074 0.57
265_R 280_I 1.072 0.57
267_L 283_L 1.071 0.57
281_T 284_S 1.066 0.56
123_F 137_W 1.064 0.56
283_L 287_Q 1.062 0.56
281_T 293_Q 1.059 0.55
103_M 131_Y 1.046 0.54
257_I 260_E 1.044 0.54
52_F 106_H 1.043 0.54
112_R 242_E 1.043 0.54
265_R 277_I 1.042 0.53
21_P 109_H 1.04 0.53
56_K 104_Q 1.035 0.53
15_K 23_T 1.034 0.53
235_R 265_R 1.03 0.52
93_F 100_M 1.027 0.52
76_Y 106_H 1.025 0.52
236_R 239_Q 1.025 0.52
93_F 107_I 1.024 0.51
283_L 288_M 1.022 0.51
278_Q 282_G 1.021 0.51
83_H 216_Y 1.02 0.51
81_I 84_Q 1.017 0.51
81_I 94_R 1.014 0.50
276_W 288_M 1.013 0.50
289_Q 293_Q 1.009 0.50
14_F 179_L 1.009 0.50
60_L 94_R 1.008 0.50
264_L 273_D 1.002 0.49
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
4dyqA20.179737.40.956Contact Map0.347
2x48A30.160123.30.961Contact Map0.478
1j9iA20.1209220.961Contact Map0.572
1jkoC10.156920.80.961Contact Map0.342
3frwA80.303919.60.962Contact Map0.454
2l02A20.1536180.963Contact Map0.425
2kz3A10.189517.80.963Contact Map0.251
4j2nA50.13417.20.963Contact Map0.444
1u9lA20.196114.10.964Contact Map0.379
2jpcA10.1569140.964Contact Map0.337

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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