| UniProt: | P0AAB8 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11877 | ||
| Length: | 142 (139) | ||
| Sequences: | 6493 | ||
| Seq/Len: | 46.71 |
| USPD
Paralog alert: 0.77 [within 20: 0.21] - ratio of genomes with paralogs Cluster includes: USPA USPC USPD USPF USPG |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 33_H | 83_K | 2.724 | 1.00 | |
| 5_H | 35_T | 2.616 | 1.00 | |
| 5_H | 33_H | 2.576 | 1.00 | |
| 92_P | 125_G | 2.443 | 1.00 | |
| 124_R | 128_N | 2.418 | 1.00 | |
| 106_L | 135_L | 2.404 | 1.00 | |
| 9_A | 109_C | 2.376 | 1.00 | |
| 35_T | 85_R | 2.257 | 1.00 | |
| 7_G | 104_C | 2.253 | 1.00 | |
| 99_M | 107_L | 2.084 | 1.00 | |
| 98_I | 102_E | 2.045 | 1.00 | |
| 109_C | 126_M | 2.038 | 1.00 | |
| 111_H | 138_P | 1.923 | 1.00 | |
| 89_G | 94_T | 1.909 | 1.00 | |
| 85_R | 98_I | 1.881 | 1.00 | |
| 22_K | 135_L | 1.848 | 1.00 | |
| 35_T | 102_E | 1.844 | 1.00 | |
| 35_T | 104_C | 1.7 | 1.00 | |
| 107_L | 130_M | 1.69 | 1.00 | |
| 8_V | 23_A | 1.678 | 1.00 | |
| 111_H | 136_I | 1.667 | 1.00 | |
| 100_Q | 131_S | 1.663 | 1.00 | |
| 94_T | 97_E | 1.659 | 1.00 | |
| 87_E | 94_T | 1.654 | 1.00 | |
| 67_D | 71_Y | 1.646 | 1.00 | |
| 127_I | 136_I | 1.646 | 1.00 | |
| 3_Y | 22_K | 1.627 | 1.00 | |
| 21_N | 76_N | 1.612 | 1.00 | |
| 35_T | 98_I | 1.546 | 1.00 | |
| 74_T | 84_L | 1.493 | 1.00 | |
| 38_H | 66_S | 1.489 | 1.00 | |
| 9_A | 95_L | 1.464 | 1.00 | |
| 23_A | 27_A | 1.452 | 1.00 | |
| 33_H | 81_K | 1.388 | 0.99 | |
| 39_I | 94_T | 1.38 | 0.99 | |
| 35_T | 83_K | 1.33 | 0.99 | |
| 26_L | 30_N | 1.32 | 0.99 | |
| 107_L | 132_A | 1.317 | 0.99 | |
| 96_L | 129_K | 1.314 | 0.99 | |
| 17_A | 76_N | 1.304 | 0.99 | |
| 37_I | 98_I | 1.297 | 0.99 | |
| 130_M | 134_L | 1.284 | 0.99 | |
| 63_K | 67_D | 1.273 | 0.99 | |
| 20_V | 73_L | 1.269 | 0.99 | |
| 74_T | 78_Q | 1.267 | 0.99 | |
| 96_L | 126_M | 1.267 | 0.99 | |
| 37_I | 95_L | 1.266 | 0.99 | |
| 22_K | 25_E | 1.249 | 0.99 | |
| 125_G | 129_K | 1.234 | 0.98 | |
| 8_V | 20_V | 1.229 | 0.98 | |
| 91_M | 122_A | 1.211 | 0.98 | |
| 22_K | 133_D | 1.199 | 0.98 | |
| 99_M | 131_S | 1.191 | 0.98 | |
| 3_Y | 133_D | 1.191 | 0.98 | |
| 87_E | 98_I | 1.191 | 0.98 | |
| 13_N | 16_D | 1.185 | 0.98 | |
| 13_N | 113_H | 1.171 | 0.98 | |
| 25_E | 29_H | 1.17 | 0.97 | |
| 123_Y | 136_I | 1.169 | 0.97 | |
| 6_I | 106_L | 1.165 | 0.97 | |
| 85_R | 102_E | 1.165 | 0.97 | |
| 96_L | 99_M | 1.163 | 0.97 | |
| 24_L | 77_I | 1.162 | 0.97 | |
| 5_H | 104_C | 1.116 | 0.96 | |
| 16_D | 19_L | 1.114 | 0.96 | |
| 23_A | 34_L | 1.109 | 0.96 | |
| 107_L | 126_M | 1.09 | 0.96 | |
| 97_E | 101_K | 1.086 | 0.96 | |
| 95_L | 126_M | 1.07 | 0.95 | |
| 69_K | 73_L | 1.051 | 0.94 | |
| 5_H | 105_D | 1.038 | 0.94 | |
| 99_M | 104_C | 1.036 | 0.94 | |
| 26_L | 108_V | 1.032 | 0.94 | |
| 59_L | 63_K | 1.025 | 0.93 | |
| 27_A | 32_A | 1.018 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3tnjA | 1 | 0.993 | 99.9 | 0.13 | Contact Map | 0.765 |
| 1jmvA | 4 | 0.9859 | 99.9 | 0.14 | Contact Map | 0.784 |
| 2dumA | 4 | 1 | 99.9 | 0.145 | Contact Map | 0.797 |
| 3s3tA | 8 | 0.9648 | 99.9 | 0.156 | Contact Map | 0.722 |
| 3olqA | 1 | 1 | 99.9 | 0.156 | Contact Map | 0.776 |
| 1mjhA | 2 | 1 | 99.9 | 0.16 | Contact Map | 0.891 |
| 2gm3A | 6 | 1 | 99.9 | 0.174 | Contact Map | 0.821 |
| 3fg9A | 6 | 0.9507 | 99.9 | 0.178 | Contact Map | 0.705 |
| 1tq8A | 6 | 0.993 | 99.9 | 0.185 | Contact Map | 0.72 |
| 3hgmA | 4 | 0.9577 | 99.9 | 0.185 | Contact Map | 0.891 |
Sequence Conservation (Image Generated using WebLogo v3)