| UniProt: | P0A6L4 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG10637 | ||
| Length: | 297 (289) | ||
| Sequences: | 4518 | ||
| Seq/Len: | 15.63 |
| NANA
Paralog alert: 0.62 [within 20: 0.03] - ratio of genomes with paralogs Cluster includes: DAPA NANA YAGE YJHH |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 228_D | 231_T | 4.396 | 1.00 | |
| 17_D | 21_A | 3.457 | 1.00 | |
| 32_Q | 69_E | 3.233 | 1.00 | |
| 119_C | 154_T | 3.083 | 1.00 | |
| 96_K | 131_G | 3 | 1.00 | |
| 24_K | 61_Q | 2.846 | 1.00 | |
| 80_V | 92_A | 2.826 | 1.00 | |
| 261_Y | 286_K | 2.75 | 1.00 | |
| 28_R | 69_E | 2.682 | 1.00 | |
| 223_A | 231_T | 2.619 | 1.00 | |
| 24_K | 65_I | 2.618 | 1.00 | |
| 197_G | 202_A | 2.543 | 1.00 | |
| 28_R | 65_I | 2.43 | 1.00 | |
| 32_Q | 73_K | 2.32 | 1.00 | |
| 231_T | 234_K | 2.261 | 1.00 | |
| 92_A | 103_V | 2.24 | 1.00 | |
| 60_E | 94_S | 2.172 | 1.00 | |
| 115_F | 151_Q | 2.124 | 1.00 | |
| 222_K | 226_E | 2.121 | 1.00 | |
| 223_A | 228_D | 2.111 | 1.00 | |
| 9_M | 41_G | 2.104 | 1.00 | |
| 116_E | 120_D | 2.085 | 1.00 | |
| 28_R | 68_E | 2.068 | 1.00 | |
| 10_A | 210_Y | 2.019 | 1.00 | |
| 32_Q | 36_Q | 2.016 | 1.00 | |
| 40_D | 222_K | 2.015 | 1.00 | |
| 146_K | 173_Q | 2.014 | 1.00 | |
| 127_D | 158_L | 1.988 | 1.00 | |
| 61_Q | 64_E | 1.963 | 1.00 | |
| 119_C | 123_R | 1.915 | 1.00 | |
| 116_E | 154_T | 1.904 | 1.00 | |
| 123_R | 127_D | 1.885 | 1.00 | |
| 33_F | 37_Q | 1.872 | 1.00 | |
| 64_E | 68_E | 1.87 | 1.00 | |
| 85_T | 121_H | 1.867 | 1.00 | |
| 152_I | 164_L | 1.857 | 1.00 | |
| 198_L | 224_L | 1.848 | 1.00 | |
| 135_V | 163_A | 1.847 | 1.00 | |
| 31_V | 66_V | 1.846 | 1.00 | |
| 123_R | 158_L | 1.825 | 1.00 | |
| 153_N | 180_E | 1.771 | 1.00 | |
| 23_D | 26_S | 1.737 | 1.00 | |
| 135_V | 206_I | 1.731 | 1.00 | |
| 234_K | 238_E | 1.712 | 1.00 | |
| 67_A | 76_L | 1.704 | 1.00 | |
| 218_Q | 222_K | 1.703 | 1.00 | |
| 61_Q | 65_I | 1.696 | 1.00 | |
| 216_R | 238_E | 1.696 | 1.00 | |
| 126_I | 158_L | 1.69 | 1.00 | |
| 37_Q | 215_W | 1.679 | 1.00 | |
| 56_L | 87_E | 1.666 | 1.00 | |
| 26_S | 29_R | 1.659 | 1.00 | |
| 148_T | 151_Q | 1.65 | 1.00 | |
| 283_P | 286_K | 1.635 | 1.00 | |
| 58_E | 271_R | 1.635 | 1.00 | |
| 286_K | 290_Q | 1.612 | 1.00 | |
| 89_Q | 124_A | 1.61 | 1.00 | |
| 105_A | 125_I | 1.584 | 1.00 | |
| 27_L | 66_V | 1.572 | 1.00 | |
| 27_L | 62_V | 1.559 | 1.00 | |
| 129_A | 132_L | 1.558 | 1.00 | |
| 120_D | 123_R | 1.558 | 1.00 | |
| 115_F | 148_T | 1.538 | 1.00 | |
| 35_I | 73_K | 1.475 | 1.00 | |
| 257_T | 282_L | 1.475 | 1.00 | |
| 155_L | 161_V | 1.456 | 1.00 | |
| 283_P | 287_A | 1.451 | 1.00 | |
| 15_P | 27_L | 1.451 | 1.00 | |
| 13_L | 259_L | 1.443 | 1.00 | |
| 103_V | 129_A | 1.436 | 1.00 | |
| 63_L | 78_A | 1.429 | 1.00 | |
| 88_S | 125_I | 1.425 | 1.00 | |
| 9_M | 43_Y | 1.416 | 1.00 | |
| 93_A | 97_R | 1.405 | 0.99 | |
| 219_G | 223_A | 1.389 | 0.99 | |
| 96_K | 129_A | 1.379 | 0.99 | |
| 92_A | 129_A | 1.377 | 0.99 | |
| 120_D | 124_A | 1.373 | 0.99 | |
| 44_V | 66_V | 1.354 | 0.99 | |
| 65_I | 68_E | 1.345 | 0.99 | |
| 35_I | 74_I | 1.341 | 0.99 | |
| 31_V | 70_A | 1.34 | 0.99 | |
| 178_R | 186_L | 1.333 | 0.99 | |
| 31_V | 69_E | 1.327 | 0.99 | |
| 260_H | 267_V | 1.326 | 0.99 | |
| 65_I | 69_E | 1.319 | 0.99 | |
| 82_C | 88_S | 1.312 | 0.99 | |
| 279_E | 282_L | 1.295 | 0.99 | |
| 219_G | 222_K | 1.284 | 0.99 | |
| 40_D | 218_Q | 1.278 | 0.99 | |
| 8_V | 39_I | 1.27 | 0.99 | |
| 60_E | 90_Q | 1.264 | 0.99 | |
| 57_S | 61_Q | 1.244 | 0.98 | |
| 50_E | 256_K | 1.226 | 0.98 | |
| 56_L | 94_S | 1.225 | 0.98 | |
| 124_A | 272_K | 1.201 | 0.98 | |
| 224_L | 229_I | 1.199 | 0.98 | |
| 257_T | 261_Y | 1.193 | 0.98 | |
| 77_I | 135_V | 1.189 | 0.98 | |
| 26_S | 266_S | 1.188 | 0.98 | |
| 195_A | 232_A | 1.178 | 0.98 | |
| 279_E | 283_P | 1.171 | 0.98 | |
| 229_I | 233_Q | 1.167 | 0.97 | |
| 70_A | 76_L | 1.158 | 0.97 | |
| 260_H | 265_V | 1.149 | 0.97 | |
| 77_I | 102_A | 1.147 | 0.97 | |
| 230_Q | 233_Q | 1.143 | 0.97 | |
| 89_Q | 93_A | 1.14 | 0.97 | |
| 287_A | 291_Q | 1.128 | 0.97 | |
| 43_Y | 104_S | 1.125 | 0.97 | |
| 60_E | 64_E | 1.125 | 0.97 | |
| 6_R | 225_K | 1.125 | 0.97 | |
| 63_L | 95_A | 1.124 | 0.97 | |
| 21_A | 86_A | 1.116 | 0.96 | |
| 278_D | 281_Y | 1.111 | 0.96 | |
| 80_V | 95_A | 1.105 | 0.96 | |
| 56_L | 90_Q | 1.105 | 0.96 | |
| 67_A | 101_D | 1.1 | 0.96 | |
| 28_R | 32_Q | 1.091 | 0.96 | |
| 103_V | 134_M | 1.084 | 0.96 | |
| 174_M | 197_G | 1.08 | 0.95 | |
| 107_T | 147_L | 1.075 | 0.95 | |
| 84_S | 87_E | 1.074 | 0.95 | |
| 60_E | 97_R | 1.068 | 0.95 | |
| 219_G | 231_T | 1.067 | 0.95 | |
| 154_T | 157_T | 1.055 | 0.95 | |
| 284_E | 287_A | 1.053 | 0.95 | |
| 94_S | 97_R | 1.049 | 0.94 | |
| 10_A | 39_I | 1.046 | 0.94 | |
| 45_G | 62_V | 1.045 | 0.94 | |
| 80_V | 103_V | 1.035 | 0.94 | |
| 124_A | 128_S | 1.031 | 0.94 | |
| 176_Q | 180_E | 1.031 | 0.94 | |
| 56_L | 91_L | 1.029 | 0.94 | |
| 103_V | 132_L | 1.024 | 0.93 | |
| 257_T | 286_K | 1.022 | 0.93 | |
| 96_K | 132_L | 1.019 | 0.93 | |
| 30_L | 259_L | 1.015 | 0.93 | |
| 116_E | 119_C | 1.015 | 0.93 | |
| 33_F | 264_V | 1.01 | 0.93 | |
| 126_I | 161_V | 1.01 | 0.93 | |
| 196_S | 199_L | 1.002 | 0.92 | |
| 277_V | 285_L | 1.001 | 0.92 | |
| 259_L | 262_M | 1 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3na8A | 4 | 0.9865 | 100 | 0.039 | Contact Map | 0.797 |
| 3eb2A | 4 | 0.9933 | 100 | 0.041 | Contact Map | 0.756 |
| 2wkjA | 4 | 0.9966 | 100 | 0.047 | Contact Map | 0.823 |
| 1xkyA | 4 | 0.9798 | 100 | 0.05 | Contact Map | 0.852 |
| 3qzeA | 4 | 0.9899 | 100 | 0.05 | Contact Map | 0.841 |
| 3si9A | 4 | 0.9933 | 100 | 0.05 | Contact Map | 0.835 |
| 4ahqA | 4 | 0.9832 | 100 | 0.051 | Contact Map | 0.771 |
| 2v9dA | 4 | 0.9933 | 100 | 0.052 | Contact Map | 0.769 |
| 4fhaA | 2 | 0.9899 | 100 | 0.053 | Contact Map | 0.77 |
| 3fluA | 4 | 0.9865 | 100 | 0.054 | Contact Map | 0.844 |
Sequence Conservation (Image Generated using WebLogo v3)