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OPENSEQ.org
YGCQ - YGCR
UniProt: Q46907 - Q46908
Length: 545
Sequences: 1223
Seq/Len: 2.48
I_Prob: 1.00
YGCQ - Putative electron transfer flavoprotein subunit YgcQ
Paralog alert: 0.43 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: FIXB YDIR YGCQ 		YGCR - Putative electron transfer flavoprotein subunit YgcR
Paralog alert: 0.38 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: FIXA YDIQ YGCR
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1o97D:C:D:CContact Map
4l2iA:B:A:BContact Map
1efvA:B:A:BContact Map
1efpAC:BD:AC:BDContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
78_R 140_E 3.07 1.00
74_R 140_E 2.92 1.00
111_Q 220_Q 2.16 0.99
74_R 146_C 1.84 0.96
80_H 106_R 1.58 0.91
83_S 133_Q 1.58 0.90
77_W 137_L 1.57 0.90
109_T 223_Q 1.43 0.84
113_E 220_Q 1.35 0.79
150_W 174_R 1.32 0.77
98_R 225_A 1.32 0.77
248_V 248_L 1.25 0.71
280_N 242_A 1.20 0.66
152_V 174_R 1.08 0.53
154_T 171_R 1.06 0.51
264_V 248_L 1.06 0.51
265_G 202_A 1.04 0.48
276_A 245_A 1.03 0.47
82_A 219_M 1.02 0.46
90_L 73_A 1.01 0.45
207_G 6_A 1.01 0.45
199_S 199_R 0.99 0.43
273_V 87_E 0.96 0.40
254_A 171_R 0.96 0.39
85_C 131_N 0.95 0.38
77_W 141_M 0.95 0.38
73_T 147_F 0.95 0.38
276_A 242_A 0.93 0.36
111_Q 222_L 0.92 0.34
110_L 219_M 0.92 0.34
71_L 181_I 0.92 0.34
173_V 91_L 0.90 0.32
273_V 241_V 0.90 0.32
60_V 190_A 0.89 0.31
263_D 231_R 0.88 0.30
103_G 185_Q 0.87 0.29
102_W 30_G 0.86 0.28
82_A 100_A 0.86 0.28
217_S 83_L 0.85 0.26
274_L 78_R 0.84 0.26
100_S 130_Q 0.83 0.25
250_I 241_V 0.83 0.24
255_S 233_A 0.82 0.24
252_H 233_A 0.82 0.24
70_E 193_V 0.82 0.23
73_T 132_G 0.82 0.23
70_E 148_T 0.81 0.23
248_V 211_T 0.81 0.23
248_V 240_T 0.81 0.22
70_E 146_C 0.80 0.22
217_S 78_R 0.80 0.21
194_A 177_L 0.80 0.21
102_W 129_G 0.80 0.21
203_V 130_Q 0.80 0.21
250_I 66_L 0.79 0.21
177_G 63_L 0.78 0.20
203_V 125_Q 0.78 0.20
197_G 43_D 0.77 0.19
150_W 153_F 0.77 0.19
219_H 167_E 0.77 0.19
274_L 156_D 0.77 0.19
200_R 49_A 0.77 0.19
64_P 33_I 0.76 0.18
266_V 236_I 0.76 0.18
254_A 235_L 0.76 0.18
104_N 126_S 0.75 0.18
165_L 248_L 0.75 0.17
216_I 124_C 0.75 0.17
247_V 230_R 0.75 0.17
85_C 133_Q 0.74 0.17
83_S 131_N 0.74 0.17
64_P 130_Q 0.74 0.17
152_V 181_I 0.74 0.17
184_E 64_T 0.74 0.17
170_R 159_F 0.74 0.16
174_V 39_L 0.74 0.16
199_S 120_I 0.73 0.16
184_E 112_Q 0.73 0.16
169_R 204_K 0.73 0.16
257_A 248_L 0.73 0.16
90_L 221_C 0.73 0.15
148_P 143_G 0.72 0.15
231_A 147_F 0.72 0.15
210_A 45_Q 0.72 0.15
165_L 236_I 0.71 0.15
255_S 45_Q 0.71 0.15
154_T 91_L 0.71 0.14
185_I 21_W 0.71 0.14
85_C 137_L 0.71 0.14
236_A 135_P 0.70 0.14
65_G 59_T 0.70 0.14
48_L 169_G 0.70 0.14
248_V 89_V 0.70 0.14
99_K 132_G 0.70 0.14
268_D 119_L 0.70 0.14
87_V 221_C 0.69 0.13
274_L 96_D 0.69 0.13
90_L 88_A 0.69 0.13
222_A 244_K 0.69 0.13
197_G 234_T 0.69 0.13
270_W 191_L 0.69 0.13
100_S 42_A 0.69 0.13
171_V 243_E 0.68 0.12
216_I 127_S 0.68 0.12
173_V 7_F 0.68 0.12
171_V 67_S 0.68 0.12
50_E 113_H 0.67 0.12
110_L 33_I 0.67 0.12
82_A 217_P 0.67 0.12
109_T 135_P 0.67 0.12
187_M 222_L 0.67 0.12
107_T 225_A 0.67 0.12
149_D 174_R 0.67 0.12
207_G 44_E 0.67 0.11
222_A 52_L 0.67 0.11
69_D 149_Q 0.66 0.11
247_V 195_G 0.66 0.11
70_E 133_Q 0.66 0.11
70_E 136_F 0.66 0.11
198_Y 196_M 0.66 0.11
253_D 102_E 0.66 0.11
217_S 183_V 0.66 0.11
217_S 42_A 0.66 0.11
196_V 12_D 0.66 0.11
64_P 135_P 0.66 0.11
72_S 119_L 0.66 0.11
253_D 203_G 0.66 0.11
72_S 240_T 0.65 0.11
77_W 60_P 0.65 0.11
265_G 235_L 0.65 0.11
194_A 192_P 0.65 0.11
242_R 47_A 0.65 0.10
89_S 3_I 0.65 0.10
50_E 89_V 0.65 0.10
242_R 13_A 0.65 0.10
280_N 246_Q 0.65 0.10
171_V 154_T 0.65 0.10
177_G 72_R 0.65 0.10
262_A 78_R 0.64 0.10
99_K 41_G 0.64 0.10
234_A 193_V 0.64 0.10
262_A 248_L 0.64 0.10
185_I 220_Q 0.64 0.10
170_R 62_S 0.64 0.10
227_I 108_I 0.64 0.10
213_V 193_V 0.64 0.10
220_L 83_L 0.63 0.10
204_M 248_L 0.63 0.10
217_S 248_L 0.63 0.09
201_A 126_S 0.63 0.09
67_F 173_C 0.63 0.09
266_V 171_R 0.63 0.09
66_T 183_V 0.63 0.09
231_A 127_S 0.62 0.09
185_I 214_A 0.62 0.09
194_A 129_G 0.62 0.09
110_L 131_N 0.62 0.09
199_S 81_M 0.62 0.09
163_D 167_E 0.62 0.09
266_V 245_A 0.62 0.09
208_V 51_L 0.62 0.09
155_E 172_C 0.62 0.09
171_V 173_C 0.62 0.09
106_L 42_A 0.62 0.09
82_A 98_R 0.61 0.09
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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