| UniProt: | P76201 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13976 | ||
| Length: | 254 (249) | ||
| Sequences: | 1717 | ||
| Seq/Len: | 6.90 |
| YDIQ
Paralog alert: 0.38 [within 20: 0.01] - ratio of genomes with paralogs Cluster includes: FIXA YDIQ YGCR |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 70_R | 81_L | 4.062 | 1.00 | |
| 152_T | 167_E | 3.782 | 1.00 | |
| 128_G | 175_C | 3.585 | 1.00 | |
| 53_E | 80_S | 3.548 | 1.00 | |
| 103_A | 106_E | 2.991 | 1.00 | |
| 43_A | 46_Q | 2.721 | 1.00 | |
| 140_I | 168_L | 2.667 | 1.00 | |
| 203_Q | 206_D | 2.528 | 1.00 | |
| 48_A | 79_H | 2.509 | 1.00 | |
| 107_K | 202_W | 2.482 | 1.00 | |
| 56_A | 73_V | 2.466 | 1.00 | |
| 145_A | 156_E | 2.396 | 1.00 | |
| 237_D | 240_E | 2.371 | 1.00 | |
| 80_S | 200_N | 2.363 | 1.00 | |
| 84_V | 100_A | 2.353 | 1.00 | |
| 74_L | 81_L | 2.23 | 1.00 | |
| 102_A | 106_E | 2.179 | 1.00 | |
| 43_A | 181_N | 2.153 | 1.00 | |
| 153_L | 168_L | 2.085 | 1.00 | |
| 113_L | 137_L | 2.028 | 1.00 | |
| 33_I | 69_V | 2.003 | 1.00 | |
| 2_K | 53_E | 1.972 | 1.00 | |
| 98_A | 134_I | 1.959 | 1.00 | |
| 143_V | 174_L | 1.946 | 1.00 | |
| 58_T | 64_L | 1.917 | 1.00 | |
| 105_I | 113_L | 1.871 | 1.00 | |
| 154_V | 167_E | 1.861 | 1.00 | |
| 118_G | 123_Y | 1.83 | 1.00 | |
| 85_Q | 201_Q | 1.811 | 1.00 | |
| 152_T | 169_S | 1.807 | 1.00 | |
| 101_L | 131_V | 1.802 | 1.00 | |
| 115_F | 131_V | 1.773 | 1.00 | |
| 168_L | 172_A | 1.76 | 1.00 | |
| 176_V | 180_I | 1.742 | 1.00 | |
| 148_R | 153_L | 1.72 | 1.00 | |
| 61_G | 64_L | 1.672 | 1.00 | |
| 112_L | 172_A | 1.669 | 1.00 | |
| 236_N | 240_E | 1.648 | 1.00 | |
| 55_A | 80_S | 1.645 | 1.00 | |
| 41_I | 78_P | 1.627 | 1.00 | |
| 187_S | 190_A | 1.617 | 1.00 | |
| 4_I | 105_I | 1.611 | 1.00 | |
| 143_V | 155_I | 1.609 | 1.00 | |
| 107_K | 200_N | 1.6 | 1.00 | |
| 202_W | 207_I | 1.596 | 1.00 | |
| 111_D | 151_N | 1.575 | 1.00 | |
| 146_I | 153_L | 1.567 | 1.00 | |
| 247_E | 251_K | 1.562 | 1.00 | |
| 6_C | 115_F | 1.555 | 1.00 | |
| 49_T | 184_R | 1.549 | 0.99 | |
| 92_A | 100_A | 1.537 | 0.99 | |
| 147_Q | 154_V | 1.534 | 0.99 | |
| 42_E | 184_R | 1.526 | 0.99 | |
| 56_A | 78_P | 1.519 | 0.99 | |
| 55_A | 82_Y | 1.492 | 0.99 | |
| 65_Q | 71_K | 1.476 | 0.99 | |
| 34_S | 37_D | 1.468 | 0.99 | |
| 62_S | 85_Q | 1.466 | 0.99 | |
| 204_A | 211_Q | 1.466 | 0.99 | |
| 154_V | 165_V | 1.465 | 0.99 | |
| 64_L | 83_L | 1.46 | 0.99 | |
| 65_Q | 201_Q | 1.435 | 0.99 | |
| 54_I | 78_P | 1.42 | 0.99 | |
| 157_R | 164_E | 1.418 | 0.99 | |
| 50_D | 147_Q | 1.408 | 0.99 | |
| 38_L | 76_R | 1.399 | 0.99 | |
| 153_L | 170_V | 1.37 | 0.98 | |
| 107_K | 207_I | 1.367 | 0.98 | |
| 57_L | 104_A | 1.338 | 0.98 | |
| 25_N | 28_N | 1.333 | 0.98 | |
| 238_S | 242_I | 1.331 | 0.98 | |
| 58_T | 83_L | 1.311 | 0.98 | |
| 2_K | 55_A | 1.303 | 0.98 | |
| 138_P | 172_A | 1.287 | 0.97 | |
| 140_I | 166_I | 1.213 | 0.96 | |
| 39_N | 181_N | 1.206 | 0.96 | |
| 156_E | 165_V | 1.202 | 0.96 | |
| 86_D | 91_H | 1.2 | 0.96 | |
| 102_A | 135_L | 1.197 | 0.96 | |
| 151_N | 169_S | 1.196 | 0.96 | |
| 84_V | 104_A | 1.182 | 0.95 | |
| 43_A | 145_A | 1.173 | 0.95 | |
| 132_G | 139_V | 1.153 | 0.94 | |
| 100_A | 104_A | 1.152 | 0.94 | |
| 149_Q | 154_V | 1.151 | 0.94 | |
| 33_I | 73_V | 1.142 | 0.94 | |
| 191_I | 197_K | 1.131 | 0.93 | |
| 103_A | 107_K | 1.128 | 0.93 | |
| 45_S | 76_R | 1.123 | 0.93 | |
| 4_I | 110_F | 1.119 | 0.93 | |
| 104_A | 202_W | 1.117 | 0.93 | |
| 105_I | 110_F | 1.112 | 0.93 | |
| 36_F | 117_E | 1.11 | 0.93 | |
| 149_Q | 152_T | 1.096 | 0.92 | |
| 45_S | 190_A | 1.076 | 0.91 | |
| 240_E | 244_E | 1.074 | 0.91 | |
| 56_A | 70_R | 1.067 | 0.91 | |
| 102_A | 131_V | 1.063 | 0.90 | |
| 137_L | 173_V | 1.059 | 0.90 | |
| 74_L | 197_K | 1.058 | 0.90 | |
| 93_L | 214_P | 1.054 | 0.90 | |
| 55_A | 108_I | 1.049 | 0.90 | |
| 43_A | 50_D | 1.047 | 0.89 | |
| 65_Q | 199_V | 1.046 | 0.89 | |
| 144_S | 156_E | 1.045 | 0.89 | |
| 156_E | 163_V | 1.04 | 0.89 | |
| 232_I | 248_H | 1.035 | 0.89 | |
| 82_Y | 202_W | 1.023 | 0.88 | |
| 105_I | 131_V | 1.016 | 0.87 | |
| 185_I | 191_I | 1.007 | 0.87 | |
| 114_I | 176_V | 1.006 | 0.87 | |
| 59_V | 92_A | 1 | 0.86 | |
| 55_A | 110_F | 1 | 0.86 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1o97C | 1 | 0.9803 | 100 | 0.212 | Contact Map | 0.787 |
| 1efpB | 2 | 0.9606 | 100 | 0.235 | Contact Map | 0.788 |
| 1efvB | 1 | 0.9646 | 100 | 0.257 | Contact Map | 0.824 |
| 1o97D | 1 | 0.8307 | 100 | 0.635 | Contact Map | 0.536 |
| 3ih5A | 4 | 0.7795 | 100 | 0.636 | Contact Map | 0.639 |
| 1efvA | 1 | 0.8268 | 99.9 | 0.667 | Contact Map | 0.702 |
| 1efpA | 2 | 0.8071 | 99.9 | 0.672 | Contact Map | 0.599 |
| 3fetA | 4 | 0.6457 | 99.9 | 0.698 | Contact Map | 0.626 |
| 3idfA | 2 | 0.437 | 90.6 | 0.932 | Contact Map | 0.539 |
| 3hgmA | 4 | 0.4488 | 90.6 | 0.932 | Contact Map | 0.604 |
Sequence Conservation (Image Generated using WebLogo v3)