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OPENSEQ.org
YFGD - YGAV
UniProt: P76569 - P77295
Length: 218
Sequences: 307
Seq/Len: 1.48
I_Prob: 0.00
YFGD - Uncharacterized protein YfgD
Paralog alert: 0.78 [within 20: 0.09] - ratio of genomes with paralogs
Cluster includes: ARSC YFFB YFGD 		YGAV - Probable HTH-type transcriptional regulator YgaV
Paralog alert: 0.75 [within 20: 0.14] - ratio of genomes with paralogs
Cluster includes: ARSR YGAV
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
32_V 59_L 1.20 0.00
40_A 58_H 1.00 0.00
56_S 39_T 0.94 0.00
37_E 22_S 0.88 0.00
45_L 53_S 0.88 0.00
116_E 37_P 0.87 0.00
63_Q 68_I 0.85 0.00
106_R 44_L 0.84 0.00
43_A 90_I 0.83 0.00
22_L 37_P 0.83 0.00
39_P 58_H 0.82 0.00
37_E 72_R 0.81 0.00
59_E 43_E 0.81 0.00
47_D 43_E 0.81 0.00
108_G 74_A 0.79 0.00
79_S 29_I 0.78 0.00
80_E 39_T 0.77 0.00
50_K 88_A 0.77 0.00
74_A 24_P 0.77 0.00
70_E 50_L 0.77 0.00
68_Y 54_A 0.77 0.00
79_S 46_R 0.76 0.00
75_D 37_P 0.76 0.00
82_A 29_I 0.76 0.00
75_D 19_K 0.76 0.00
41_D 91_A 0.73 0.00
74_A 44_L 0.73 0.00
57_A 17_L 0.73 0.00
22_L 28_L 0.72 0.00
12_R 37_P 0.72 0.00
65_E 59_L 0.72 0.00
23_L 99_P 0.72 0.00
38_T 19_K 0.72 0.00
38_T 84_E 0.71 0.00
26_N 50_L 0.71 0.00
87_M 22_S 0.71 0.00
84_I 39_T 0.71 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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