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OPENSEQ.org
YDIQ - YDIR
UniProt: P76201 - P77378
Length: 566
Sequences: 1382
Seq/Len: 2.48
I_Prob: 1.00
YDIQ - Putative electron transfer flavoprotein subunit YdiQ
Paralog alert: 0.38 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: FIXA YDIQ YGCR 		YDIR - Putative electron transfer flavoprotein subunit YdiR
Paralog alert: 0.42 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: FIXB YDIR YGCQ
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
167_E 177_L 3.37 1.00
217_E 136_K 2.86 1.00
133_E 97_R 2.39 0.99
133_E 101_Q 2.38 0.99
239_P 309_Q 2.23 0.99
164_E 181_R 1.81 0.96
126_Q 106_L 1.74 0.95
245_L 277_V 1.62 0.92
222_R 123_E 1.59 0.91
217_E 138_N 1.57 0.90
220_G 134_Q 1.57 0.90
243_A 309_Q 1.56 0.90
139_V 97_R 1.40 0.83
130_L 100_V 1.38 0.81
99_K 103_N 1.38 0.81
167_E 179_R 1.37 0.81
169_S 175_E 1.31 0.76
138_P 175_E 1.30 0.76
165_V 180_E 1.26 0.72
136_Q 175_E 1.23 0.69
219_V 136_K 1.15 0.62
136_Q 101_Q 0.98 0.41
139_V 64_T 0.97 0.40
239_P 305_A 0.96 0.40
245_L 293_Y 0.96 0.39
64_L 113_V 0.95 0.38
237_D 301_K 0.89 0.31
237_D 95_A 0.88 0.30
114_I 197_V 0.88 0.29
93_L 105_A 0.87 0.29
124_A 108_N 0.86 0.28
234_I 295_L 0.86 0.28
238_S 302_V 0.85 0.27
101_L 295_L 0.83 0.25
34_S 147_A 0.83 0.24
84_V 199_G 0.82 0.24
194_A 294_G 0.82 0.24
242_I 305_A 0.82 0.23
154_V 179_R 0.81 0.23
134_I 100_V 0.81 0.22
214_P 139_S 0.80 0.22
249_L 232_E 0.80 0.21
221_I 133_A 0.79 0.21
3_I 207_Q 0.78 0.20
168_L 178_C 0.78 0.20
201_Q 277_V 0.77 0.19
165_V 179_R 0.76 0.18
215_L 144_I 0.76 0.18
140_I 164_T 0.76 0.18
141_N 93_A 0.75 0.18
124_A 106_L 0.75 0.17
218_L 133_A 0.75 0.17
42_E 228_R 0.73 0.16
18_V 131_A 0.73 0.16
149_Q 303_V 0.72 0.15
36_F 225_G 0.72 0.15
118_G 231_A 0.72 0.15
173_V 105_A 0.71 0.14
91_H 105_A 0.71 0.14
84_V 26_Q 0.70 0.14
218_L 19_E 0.70 0.14
241_A 297_G 0.70 0.13
123_Y 125_R 0.69 0.13
152_T 51_C 0.69 0.13
206_D 31_V 0.69 0.13
140_I 96_A 0.69 0.13
76_R 246_S 0.68 0.13
150_G 60_A 0.68 0.13
93_L 141_L 0.68 0.13
246_A 306_L 0.68 0.13
164_E 283_K 0.68 0.12
158_T 151_Q 0.68 0.12
136_Q 69_E 0.68 0.12
162_D 12_D 0.68 0.12
124_A 107_V 0.68 0.12
117_E 245_V 0.67 0.12
151_N 158_T 0.67 0.12
101_L 303_V 0.67 0.12
135_L 296_V 0.67 0.12
105_I 107_V 0.67 0.11
105_I 212_M 0.66 0.11
150_G 43_A 0.66 0.11
23_T 127_Y 0.66 0.11
148_R 94_L 0.66 0.11
165_V 182_R 0.66 0.11
221_I 131_A 0.66 0.11
130_L 108_N 0.66 0.11
243_A 308_S 0.66 0.11
153_L 86_A 0.66 0.11
48_A 73_A 0.65 0.11
125_Q 96_A 0.65 0.11
63_L 203_G 0.65 0.11
205_S 187_S 0.65 0.11
115_F 55_L 0.65 0.10
14_Q 246_S 0.65 0.10
155_I 156_S 0.65 0.10
6_C 236_W 0.65 0.10
237_D 164_T 0.65 0.10
235_D 283_K 0.65 0.10
233_I 294_G 0.64 0.10
169_S 168_P 0.64 0.10
120_G 245_V 0.64 0.10
82_Y 295_L 0.64 0.10
36_F 149_G 0.64 0.10
160_E 189_V 0.64 0.10
123_Y 231_A 0.64 0.10
20_P 289_N 0.64 0.10
186_P 289_N 0.63 0.10
173_V 177_L 0.63 0.10
182_V 83_L 0.63 0.10
243_A 253_D 0.63 0.10
140_I 260_I 0.63 0.10
102_A 161_Q 0.63 0.09
140_I 198_V 0.63 0.09
70_R 82_M 0.63 0.09
238_S 297_G 0.62 0.09
155_I 111_T 0.62 0.09
119_S 129_G 0.62 0.09
57_L 186_A 0.62 0.09
92_A 111_T 0.62 0.09
35_Q 125_R 0.62 0.09
218_L 107_V 0.62 0.09
37_D 241_R 0.62 0.09
214_P 105_A 0.62 0.09
243_A 47_Y 0.62 0.09
174_L 94_L 0.62 0.09
140_I 216_L 0.62 0.09
6_C 55_L 0.62 0.09
93_L 81_A 0.61 0.09
3_I 114_D 0.61 0.09
207_I 203_G 0.61 0.09
123_Y 87_A 0.61 0.09
212_S 156_S 0.61 0.09
3_I 198_V 0.61 0.09
166_I 306_L 0.61 0.09
124_A 105_A 0.61 0.09
173_V 184_K 0.61 0.08
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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