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OPENSEQ.org

CYSQ - NSRR
UniProt: P22255 - P0AF63
Length: 387
Sequences: 225
Seq/Len: 0.60
I_Prob: 0.01

CYSQ - 3'(2'),5'-bisphosphate nucleotidase CysQ
Paralog alert: 0.66 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: CYSQ SUHB
NSRR - HTH-type transcriptional repressor NsrR
Paralog alert: 0.62 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: ISCR NSRR
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
225_G 79_V 1.62 0.01
7_Q 30_E 1.38 0.00
56_T 32_T 1.33 0.00
115_V 79_V 1.32 0.00
189_E 32_T 1.31 0.00
42_I 75_R 1.26 0.00
128_E 15_I 1.25 0.00
210_H 17_M 1.24 0.00
113_G 88_L 1.21 0.00
58_D 66_R 1.17 0.00
14_D 52_A 1.16 0.00
38_T 77_G 1.15 0.00
25_P 2_Q 1.13 0.00
115_V 126_D 1.12 0.00
58_D 117_T 1.11 0.00
189_E 20_L 1.11 0.00
43_A 128_V 1.09 0.00
32_A 121_N 1.08 0.00
51_G 123_T 1.08 0.00
145_R 128_V 1.06 0.00
202_N 126_D 1.06 0.00
91_F 94_E 1.05 0.00
132_W 36_G 1.05 0.00
58_D 71_A 1.04 0.00
61_V 79_V 1.03 0.00
227_P 79_V 1.03 0.00
55_L 126_D 1.03 0.00
106_D 47_N 1.02 0.00
132_W 114_S 0.99 0.00
74_Q 130_E 0.99 0.00
123_M 53_G 0.99 0.00
153_V 47_N 0.98 0.00
174_Q 68_G 0.98 0.00
14_D 114_S 0.98 0.00
6_C 81_R 0.98 0.00
147_A 71_A 0.98 0.00
125_S 80_V 0.97 0.00
30_S 84_E 0.96 0.00
27_D 51_R 0.96 0.00
71_E 113_Q 0.96 0.00
109_K 48_Q 0.96 0.00
98_F 38_S 0.96 0.00
28_V 76_I 0.96 0.00
17_M 32_T 0.95 0.00
198_F 15_I 0.94 0.00
53_R 73_A 0.94 0.00
113_G 99_T 0.94 0.00
68_P 78_D 0.94 0.00
53_R 128_V 0.94 0.00
142_I 47_N 0.93 0.00
167_L 127_L 0.93 0.00
138_V 130_E 0.92 0.00
104_L 84_E 0.92 0.00
63_S 98_I 0.92 0.00
104_L 51_R 0.91 0.00
100_V 88_L 0.91 0.00
235_S 10_G 0.91 0.00
170_L 72_S 0.90 0.00
143_Q 113_Q 0.89 0.00
112_L 78_D 0.89 0.00
212_V 113_Q 0.88 0.00
33_D 126_D 0.87 0.00
142_I 48_Q 0.87 0.00
57_P 49_L 0.87 0.00
138_V 17_M 0.87 0.00
100_V 71_A 0.86 0.00
168_Q 70_P 0.86 0.00
1_M 68_G 0.86 0.00
122_V 114_S 0.86 0.00
116_Y 81_R 0.86 0.00
212_V 69_K 0.86 0.00
161_A 69_K 0.86 0.00
38_T 52_A 0.86 0.00
92_I 92_S 0.86 0.00
164_K 69_K 0.86 0.00
71_E 120_D 0.86 0.00
225_G 36_G 0.85 0.00
127_A 75_R 0.85 0.00
102_I 66_R 0.85 0.00
53_R 76_I 0.84 0.00
148_R 53_G 0.83 0.00
52_L 116_L 0.83 0.00
36_P 47_N 0.83 0.00
152_V 95_F 0.83 0.00
206_T 129_E 0.83 0.00
37_V 57_A 0.82 0.00
98_F 90_N 0.82 0.00
60_P 68_G 0.82 0.00
92_I 75_R 0.82 0.00
77_Q 23_G 0.82 0.00
112_L 52_A 0.82 0.00
159_A 48_Q 0.81 0.00
79_Y 114_S 0.81 0.00
78_R 71_A 0.81 0.00
54_T 24_R 0.81 0.00
58_D 73_A 0.81 0.00
194_L 2_Q 0.81 0.00
19_V 52_A 0.81 0.00
38_T 75_R 0.81 0.00
63_S 126_D 0.81 0.00
224_Q 76_I 0.81 0.00
7_Q 112_V 0.81 0.00
30_S 72_S 0.81 0.00
23_T 17_M 0.81 0.00
198_F 130_E 0.80 0.00
23_T 48_Q 0.80 0.00
224_Q 72_S 0.80 0.00
148_R 113_Q 0.80 0.00
137_G 128_V 0.80 0.00
63_S 78_D 0.80 0.00
115_V 30_E 0.80 0.00
23_T 56_T 0.79 0.00
32_A 74_I 0.79 0.00
192_A 126_D 0.79 0.00
29_V 125_A 0.79 0.00
46_T 78_D 0.79 0.00
150_P 21_P 0.79 0.00
26_M 78_D 0.79 0.00
21_D 122_Y 0.79 0.00
170_L 81_R 0.79 0.00
82_V 55_V 0.78 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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