| UniProt: | P0AF63 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11212 | ||
| Length: | 141 (132) | ||
| Sequences: | 3312 | ||
| Seq/Len: | 25.09 |
| NSRR
Paralog alert: 0.62 [within 20: 0.02] - ratio of genomes with paralogs Cluster includes: ISCR NSRR |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 77_G | 120_D | 4.37 | 1.00 | |
| 91_C | 102_C | 2.98 | 1.00 | |
| 125_A | 129_E | 2.915 | 1.00 | |
| 72_S | 125_A | 2.911 | 1.00 | |
| 110_K | 118_E | 2.855 | 1.00 | |
| 56_T | 66_R | 2.745 | 1.00 | |
| 16_Y | 34_V | 2.727 | 1.00 | |
| 14_L | 54_Y | 2.704 | 1.00 | |
| 10_G | 83_L | 2.678 | 1.00 | |
| 69_K | 78_D | 2.566 | 1.00 | |
| 14_L | 124_L | 2.297 | 1.00 | |
| 77_G | 81_R | 2.235 | 1.00 | |
| 17_M | 55_V | 2.194 | 1.00 | |
| 114_S | 118_E | 2.193 | 1.00 | |
| 81_R | 120_D | 2.127 | 1.00 | |
| 52_A | 82_E | 2.068 | 1.00 | |
| 96_C | 102_C | 1.961 | 1.00 | |
| 70_P | 73_A | 1.889 | 1.00 | |
| 91_C | 96_C | 1.857 | 1.00 | |
| 13_A | 46_I | 1.84 | 1.00 | |
| 69_K | 73_A | 1.695 | 1.00 | |
| 25_M | 66_R | 1.617 | 1.00 | |
| 18_A | 128_V | 1.578 | 1.00 | |
| 111_A | 115_F | 1.553 | 1.00 | |
| 110_K | 122_Y | 1.522 | 1.00 | |
| 114_S | 117_T | 1.519 | 1.00 | |
| 75_R | 123_T | 1.493 | 1.00 | |
| 50_S | 57_A | 1.489 | 1.00 | |
| 37_V | 42_M | 1.488 | 1.00 | |
| 24_R | 30_E | 1.475 | 1.00 | |
| 118_E | 121_N | 1.452 | 1.00 | |
| 69_K | 74_I | 1.436 | 1.00 | |
| 29_S | 39_R | 1.401 | 0.99 | |
| 81_R | 116_L | 1.371 | 0.99 | |
| 16_Y | 26_T | 1.323 | 0.99 | |
| 7_T | 80_V | 1.311 | 0.99 | |
| 8_D | 12_R | 1.286 | 0.99 | |
| 29_S | 33_D | 1.257 | 0.99 | |
| 111_A | 114_S | 1.255 | 0.99 | |
| 78_D | 81_R | 1.242 | 0.98 | |
| 113_Q | 117_T | 1.231 | 0.98 | |
| 13_A | 42_M | 1.231 | 0.98 | |
| 58_V | 66_R | 1.227 | 0.98 | |
| 75_R | 78_D | 1.222 | 0.98 | |
| 111_A | 119_L | 1.22 | 0.98 | |
| 56_T | 68_G | 1.218 | 0.98 | |
| 47_N | 51_R | 1.184 | 0.98 | |
| 6_F | 44_K | 1.176 | 0.98 | |
| 54_Y | 74_I | 1.175 | 0.98 | |
| 80_V | 119_L | 1.17 | 0.97 | |
| 67_L | 71_A | 1.142 | 0.97 | |
| 117_T | 121_N | 1.113 | 0.96 | |
| 28_I | 46_I | 1.105 | 0.96 | |
| 110_K | 130_E | 1.095 | 0.96 | |
| 27_S | 30_E | 1.084 | 0.96 | |
| 14_L | 79_V | 1.079 | 0.95 | |
| 46_I | 55_V | 1.07 | 0.95 | |
| 112_V | 116_L | 1.059 | 0.95 | |
| 16_Y | 20_L | 1.027 | 0.94 | |
| 19_S | 128_V | 1 | 0.92 | |
| 20_L | 24_R | 1 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 4hf1A | 2 | 0.9929 | 100 | 0.164 | Contact Map | 0.721 |
| 4hf0A | 2 | 0.9858 | 100 | 0.22 | Contact Map | 0.742 |
| 1xd7A | 1 | 0.9645 | 100 | 0.225 | Contact Map | 0.7 |
| 3k69A | 1 | 0.9929 | 100 | 0.236 | Contact Map | 0.679 |
| 1ylfA | 3 | 0.9574 | 100 | 0.256 | Contact Map | 0.725 |
| 3lwfA | 4 | 0.9433 | 100 | 0.26 | Contact Map | 0.821 |
| 3t8rA | 1 | 0.9433 | 99.9 | 0.304 | Contact Map | 0.737 |
| 2y75A | 6 | 0.9007 | 99.9 | 0.343 | Contact Map | 0.871 |
| 2jscA | 2 | 0.7305 | 98.4 | 0.737 | Contact Map | 0.473 |
| 3rkxA | 1 | 0.9007 | 97.4 | 0.793 | Contact Map | 0.499 |
Sequence Conservation (Image Generated using WebLogo v3)