| UniProt: | P0AGK8 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13397 | ||
| Length: | 162 (135) | ||
| Sequences: | 3147 | ||
| Seq/Len: | 23.31 |
| ISCR
Paralog alert: 0.58 [within 20: 0.02] - ratio of genomes with paralogs Cluster includes: ISCR NSRR |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 77_G | 122_N | 4.519 | 1.00 | |
| 127_G | 131_N | 2.975 | 1.00 | |
| 92_C | 104_C | 2.964 | 1.00 | |
| 72_S | 127_G | 2.916 | 1.00 | |
| 56_S | 66_L | 2.863 | 1.00 | |
| 112_D | 120_F | 2.815 | 1.00 | |
| 14_M | 54_L | 2.775 | 1.00 | |
| 16_D | 34_R | 2.692 | 1.00 | |
| 10_A | 83_V | 2.69 | 1.00 | |
| 69_K | 78_E | 2.575 | 1.00 | |
| 14_M | 126_L | 2.36 | 1.00 | |
| 17_V | 55_V | 2.274 | 1.00 | |
| 77_G | 81_S | 2.245 | 1.00 | |
| 92_C | 98_C | 2.244 | 1.00 | |
| 81_S | 122_N | 2.206 | 1.00 | |
| 116_R | 120_F | 2.121 | 1.00 | |
| 52_N | 82_A | 2.064 | 1.00 | |
| 98_C | 104_C | 2.002 | 1.00 | |
| 70_D | 73_S | 1.822 | 1.00 | |
| 13_A | 46_F | 1.81 | 1.00 | |
| 18_A | 130_V | 1.656 | 1.00 | |
| 69_K | 73_S | 1.609 | 1.00 | |
| 113_L | 117_L | 1.608 | 1.00 | |
| 112_D | 124_I | 1.593 | 1.00 | |
| 50_R | 57_S | 1.579 | 1.00 | |
| 116_R | 119_G | 1.553 | 1.00 | |
| 25_P | 66_L | 1.549 | 1.00 | |
| 37_I | 42_L | 1.546 | 1.00 | |
| 120_F | 123_N | 1.519 | 1.00 | |
| 75_A | 125_T | 1.49 | 1.00 | |
| 24_G | 30_D | 1.428 | 1.00 | |
| 7_G | 80_I | 1.397 | 0.99 | |
| 69_K | 74_I | 1.37 | 0.99 | |
| 8_R | 12_T | 1.361 | 0.99 | |
| 81_S | 118_T | 1.359 | 0.99 | |
| 29_A | 39_L | 1.335 | 0.99 | |
| 29_A | 33_E | 1.305 | 0.99 | |
| 78_E | 81_S | 1.286 | 0.99 | |
| 58_V | 66_L | 1.28 | 0.99 | |
| 80_I | 121_L | 1.272 | 0.99 | |
| 75_A | 78_E | 1.258 | 0.99 | |
| 16_D | 26_V | 1.251 | 0.99 | |
| 13_A | 42_L | 1.246 | 0.98 | |
| 113_L | 116_R | 1.227 | 0.98 | |
| 113_L | 121_L | 1.202 | 0.98 | |
| 47_S | 51_K | 1.198 | 0.98 | |
| 119_G | 123_N | 1.194 | 0.98 | |
| 56_S | 68_G | 1.191 | 0.98 | |
| 115_D | 119_G | 1.19 | 0.98 | |
| 54_L | 74_I | 1.156 | 0.97 | |
| 28_L | 46_F | 1.151 | 0.97 | |
| 6_K | 44_Q | 1.134 | 0.97 | |
| 67_L | 71_A | 1.072 | 0.95 | |
| 46_F | 55_V | 1.072 | 0.95 | |
| 16_D | 35_Q | 1.062 | 0.95 | |
| 4_T | 84_D | 1.06 | 0.95 | |
| 77_G | 118_T | 1.039 | 0.94 | |
| 19_L | 130_V | 1.03 | 0.94 | |
| 9_Y | 37_I | 1.029 | 0.94 | |
| 41_Y | 45_L | 1.017 | 0.93 | |
| 120_F | 124_I | 1.009 | 0.93 | |
| 14_M | 79_V | 1.009 | 0.93 | |
| 112_D | 132_N | 1.005 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 4hf1A | 2 | 1 | 100 | 0.223 | Contact Map | 0.718 |
| 1xd7A | 1 | 0.8642 | 100 | 0.369 | Contact Map | 0.705 |
| 4hf0A | 2 | 0.8704 | 100 | 0.377 | Contact Map | 0.732 |
| 3k69A | 1 | 0.9074 | 100 | 0.409 | Contact Map | 0.671 |
| 1ylfA | 3 | 0.8457 | 100 | 0.414 | Contact Map | 0.729 |
| 3lwfA | 4 | 0.8642 | 100 | 0.421 | Contact Map | 0.82 |
| 3t8rA | 1 | 0.8642 | 99.9 | 0.46 | Contact Map | 0.741 |
| 2y75A | 6 | 0.7901 | 99.9 | 0.482 | Contact Map | 0.877 |
| 2jscA | 2 | 0.642 | 98.2 | 0.802 | Contact Map | 0.508 |
| 3rkxA | 1 | 0.8827 | 97.3 | 0.839 | Contact Map | 0.471 |
Sequence Conservation (Image Generated using WebLogo v3)