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OPENSEQ.org

TDCB - YBIB
UniProt: P0AGF6 - P30177
Length: 649
Sequences: 630
Seq/Len: 1.00
I_Prob: 0.00

TDCB - L-threonine dehydratase catabolic TdcB
Paralog alert: 0.92 [within 20: 0.19] - ratio of genomes with paralogs
Cluster includes: CYSK CYSM DPAL SDHD TDCB TRPB
YBIB - Uncharacterized protein YbiB
Paralog alert: 0.33 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YBIB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
44_I 300_L 1.12 0.00
62_A 86_P 1.02 0.00
63_F 101_L 1.01 0.00
37_S 138_T 1.00 0.00
96_M 44_G 0.91 0.00
79_V 229_E 0.90 0.00
42_G 66_M 0.90 0.00
264_D 72_K 0.89 0.00
96_M 222_A 0.88 0.00
33_S 113_V 0.88 0.00
171_E 132_L 0.88 0.00
62_A 93_K 0.88 0.00
257_D 146_A 0.85 0.00
34_N 45_V 0.85 0.00
290_A 121_P 0.82 0.00
63_F 56_E 0.81 0.00
25_I 103_I 0.81 0.00
113_K 91_A 0.81 0.00
180_I 310_S 0.81 0.00
118_C 111_P 0.80 0.00
7_L 265_L 0.80 0.00
62_A 183_T 0.79 0.00
148_I 229_E 0.79 0.00
23_G 204_H 0.79 0.00
76_K 250_M 0.78 0.00
153_Y 148_L 0.78 0.00
33_S 235_N 0.77 0.00
139_S 60_L 0.76 0.00
283_G 165_L 0.76 0.00
23_G 173_W 0.76 0.00
317_L 178_R 0.76 0.00
103_V 150_E 0.76 0.00
129_D 173_W 0.75 0.00
164_T 219_G 0.75 0.00
170_M 216_S 0.74 0.00
319_R 127_E 0.74 0.00
109_A 62_F 0.74 0.00
261_V 71_I 0.74 0.00
144_M 183_T 0.74 0.00
109_A 288_I 0.73 0.00
208_V 284_G 0.73 0.00
190_A 46_L 0.73 0.00
148_I 291_S 0.73 0.00
286_A 266_P 0.73 0.00
139_S 294_I 0.73 0.00
272_A 66_M 0.73 0.00
286_A 245_I 0.72 0.00
164_T 272_E 0.72 0.00
229_R 7_I 0.72 0.00
289_C 175_M 0.72 0.00
59_I 235_N 0.71 0.00
213_V 94_Q 0.71 0.00
79_V 240_P 0.71 0.00
254_L 26_R 0.71 0.00
164_T 18_R 0.71 0.00
96_M 103_I 0.71 0.00
21_L 52_K 0.71 0.00
25_I 86_P 0.71 0.00
306_T 37_V 0.70 0.00
142_V 302_A 0.70 0.00
164_T 72_K 0.70 0.00
44_I 302_A 0.70 0.00
110_P 91_A 0.70 0.00
123_E 142_G 0.70 0.00
104_V 43_G 0.69 0.00
227_T 199_L 0.69 0.00
110_P 299_C 0.69 0.00
107_K 81_M 0.69 0.00
206_I 179_N 0.69 0.00
56_S 235_N 0.69 0.00
243_P 65_A 0.69 0.00
228_H 81_M 0.68 0.00
103_V 287_P 0.68 0.00
324_T 316_V 0.68 0.00
139_S 66_M 0.68 0.00
109_A 180_S 0.68 0.00
59_I 237_Q 0.68 0.00
285_G 260_A 0.68 0.00
308_S 265_L 0.68 0.00
295_G 315_R 0.67 0.00
96_M 63_Y 0.67 0.00
96_M 100_L 0.67 0.00
139_S 163_P 0.67 0.00
243_P 192_A 0.67 0.00
250_I 160_A 0.67 0.00
242_R 198_R 0.67 0.00
264_D 246_D 0.67 0.00
250_I 215_F 0.67 0.00
88_Q 282_L 0.67 0.00
179_V 206_E 0.67 0.00
201_P 34_N 0.67 0.00
153_Y 41_E 0.66 0.00
256_D 280_R 0.66 0.00
206_I 241_Q 0.66 0.00
221_H 103_I 0.66 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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