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OPENSEQ.org

RPOE - SRMB
UniProt: P0AGB6 - P21507
Length: 635
Sequences: 541
Seq/Len: 0.96
I_Prob: 0.00

RPOE - RNA polymerase sigma-E factor
Paralog alert: 0.65 [within 20: 0.13] - ratio of genomes with paralogs
Cluster includes: FECI RPOE
SRMB - ATP-dependent RNA helicase SrmB
Paralog alert: 0.86 [within 20: 0.09] - ratio of genomes with paralogs
Cluster includes: DBPA DEAD RHLB RHLE SRMB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
49_V 303_V 1.20 0.00
178_R 317_V 0.98 0.00
52_E 27_P 0.95 0.00
80_N 171_I 0.92 0.00
57_A 275_N 0.91 0.00
48_D 97_R 0.87 0.00
157_E 15_L 0.86 0.00
126_E 138_L 0.83 0.00
139_P 277_Y 0.83 0.00
46_V 63_L 0.80 0.00
91_R 130_V 0.80 0.00
116_S 317_V 0.80 0.00
153_G 21_D 0.79 0.00
155_S 351_L 0.79 0.00
59_R 81_I 0.78 0.00
131_V 180_W 0.77 0.00
69_A 63_L 0.77 0.00
166_P 323_F 0.77 0.00
48_D 146_F 0.77 0.00
164_D 131_V 0.77 0.00
72_T 278_L 0.76 0.00
84_N 275_N 0.75 0.00
34_A 303_V 0.75 0.00
33_V 174_I 0.74 0.00
53_A 155_I 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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