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OPENSEQ.org

RL28 - YICR
UniProt: P0A7M2 - P25531
Length: 300
Sequences: 192
Seq/Len: 0.65
I_Prob: 0.17

RL28 - 50S ribosomal protein L28
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL28
YICR - UPF0758 protein YicR
Paralog alert: 0.03 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: YEES YFJY YICR YKFG
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
70_E 140_L 1.88 0.17
78_Y 157_R 1.32 0.04
70_E 207_V 1.32 0.04
51_V 157_R 1.29 0.03
52_S 78_A 1.22 0.03
78_Y 195_C 1.21 0.03
66_T 200_L 1.16 0.02
36_H 146_N 1.14 0.02
37_R 58_L 1.14 0.02
71_L 15_L 1.13 0.02
77_K 158_E 1.13 0.02
14_T 211_G 1.13 0.02
62_K 218_E 1.10 0.02
42_S 136_T 1.09 0.02
48_T 213_Y 1.09 0.02
26_K 170_A 1.09 0.02
13_V 211_G 1.08 0.02
65_D 136_T 1.07 0.01
53_A 54_S 1.06 0.01
52_S 157_R 1.06 0.01
24_A 191_I 1.05 0.01
34_H 96_R 1.04 0.01
14_T 127_F 1.03 0.01
24_A 125_V 1.03 0.01
34_H 74_V 1.02 0.01
46_F 15_L 1.01 0.01
65_D 40_D 1.00 0.01
51_V 96_R 1.00 0.01
18_R 216_F 0.99 0.01
44_K 208_I 0.97 0.01
18_R 169_L 0.97 0.01
52_S 86_L 0.97 0.01
2_S 145_L 0.97 0.01
18_R 191_I 0.96 0.01
18_R 195_C 0.96 0.01
73_A 103_S 0.95 0.01
39_W 166_A 0.95 0.01
44_K 134_V 0.94 0.01
22_L 41_V 0.94 0.01
78_Y 148_V 0.94 0.01
56_M 146_N 0.94 0.01
23_N 165_S 0.94 0.01
69_A 196_Q 0.94 0.01
39_W 209_G 0.93 0.01
24_A 120_R 0.93 0.01
34_H 170_A 0.93 0.01
22_L 42_L 0.93 0.01
38_F 166_A 0.92 0.01
34_H 62_E 0.92 0.01
62_K 60_T 0.92 0.01
68_L 138_R 0.92 0.01
47_V 72_I 0.92 0.01
62_K 33_R 0.91 0.01
53_A 127_F 0.91 0.01
24_A 131_Q 0.91 0.01
38_F 13_K 0.91 0.01
54_K 190_R 0.90 0.01
77_K 19_I 0.90 0.01
69_A 202_V 0.90 0.01
36_H 190_R 0.89 0.01
35_S 191_I 0.89 0.01
58_V 146_N 0.89 0.01
51_V 189_E 0.89 0.01
66_T 81_K 0.88 0.01
34_H 127_F 0.88 0.01
69_A 194_S 0.87 0.01
39_W 49_L 0.87 0.01
42_S 87_A 0.87 0.01
71_L 145_L 0.87 0.01
56_M 90_Y 0.86 0.01
26_K 137_H 0.86 0.01
48_T 125_V 0.86 0.01
56_M 145_L 0.86 0.01
65_D 17_F 0.85 0.01
18_R 131_Q 0.85 0.01
65_D 102_L 0.85 0.01
53_A 146_N 0.85 0.01
18_R 214_V 0.85 0.01
48_T 159_A 0.84 0.01
46_F 131_Q 0.83 0.01
26_K 148_V 0.83 0.01
74_R 86_L 0.83 0.01
78_Y 101_L 0.83 0.01
51_V 36_T 0.82 0.01
16_N 169_L 0.82 0.01
58_V 72_I 0.82 0.01
24_A 119_E 0.81 0.01
51_V 149_E 0.81 0.01
56_M 72_I 0.81 0.01
51_V 77_F 0.81 0.01
51_V 63_Y 0.81 0.01
54_K 146_N 0.80 0.01
14_T 201_R 0.80 0.01
42_S 43_T 0.80 0.01
44_K 211_G 0.80 0.01
78_Y 210_R 0.80 0.01
3_R 118_E 0.80 0.01
21_A 118_E 0.80 0.01
58_V 116_T 0.79 0.01
70_E 100_P 0.79 0.01
68_L 127_F 0.79 0.01
36_H 90_Y 0.78 0.01
18_R 125_V 0.78 0.01
71_L 96_R 0.77 0.01
58_V 147_H 0.77 0.01
36_H 145_L 0.77 0.01
17_N 54_S 0.77 0.01
70_E 138_R 0.76 0.01
54_K 145_L 0.76 0.01
4_V 32_L 0.76 0.00
65_D 183_A 0.76 0.00
47_V 57_G 0.76 0.00
23_N 48_M 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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