OPENSEQ.org -1516281329- GREMLIN Submission

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mep50

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Coupling matrix for [A:0174] and [L:0218]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0	-0.3	0.3	0.3	0.4	-0.1	0.1	-0.1	-0.3	0.2	0	0.2	0.1	-0.3	0.2	-0.3	0	0.1	-0.1	0.3
F	0.2	0.9	-0.1	-0.6	-0.6	0	-0.1	0.4	0	-0.1	0	-0.1	0.2	-0.1	-0.1	-0.3	0.1	0.4	0.1	-0.4
I	-0.3	-0.8	0.5	0.8	-0.2	0.6	-0.1	0.1	-0.1	-0.1	0.4	0.2	-0.1	0.3	0.1	0	-0.1	0	-0.2	-0.6
L	-0.1	0.4	0.1	0.7	-0.6	1.1	-0.1	-0.2	0.1	-0.1	-0.1	0.1	-0.2	0.1	0.1	0.2	-0.7	0	0	0
V	-0.1	0	0.2	0.7	0.2	0.4	0	-0.2	-0.2	0.1	0.1	-0.2	-0.3	-0.3	0.1	0.1	-0.4	-0.5	0.4	0.1
M	-0.1	0.1	0	0.1	-0.3	0.5	0	-0.1	0	0	0	0	-0.1	-0.1	0.2	0	0.1	0.1	-0.1	-0.6
W	-0.3	0	-0.3	-0.1	-0.3	0.2	0	0	0	0	0	0.2	0	0	0	-0.2	0.1	-0.1	-0.1	-0.3
Y	0.4	0	-0.1	-0.2	0.1	-0.4	0	0.2	0	-0.1	0	-0.1	-0.1	-0.1	-0.1	-0.1	-0.1	-0.2	0	0.4
D	-0.2	-0.3	0.3	-0.3	0.9	-0.8	-0.2	-0.1	-0.2	0	-0.1	0.1	-0.2	0.1	-0.1	-0.8	0.6	0.4	0.4	0.7
E	0.1	0	0.2	0	0	0.1	-0.2	-0.3	-0.1	0	-0.1	0.3	-0.2	-0.1	0	0.5	-0.5	0	-0.1	0.1
K	-0.2	0.6	0.7	0.7	0.1	0.4	-0.2	0.5	0.1	-0.2	-0.1	-0.1	-0.3	-0.3	-0.2	0.2	-0.5	-0.7	-0.5	-0.4
R	0.1	-0.4	0	0	0	0.3	0	-0.2	0.5	0.4	-0.1	0	0.4	-0.3	-0.1	-0.6	-0.3	0.4	-0.5	0.2
H	0.2	0.5	-0.5	-0.2	0.3	0.1	-0.1	0.1	-0.1	-0.1	-0.1	-0.1	-0.1	-0.2	-0.1	-0.1	0.2	0	-0.3	0.7
N	0.3	0.6	-0.1	-0.4	0.1	-0.9	-0.1	-0.1	0	-0.1	0	-0.1	-0.1	0.4	-0.1	0.3	0.7	-0.3	-0.2	-0.7
Q	0.1	0.3	0.3	0.3	0.1	-0.2	-0.2	-0.2	-0.1	-0.2	-0.1	-0.2	0.3	-0.1	-0.2	0	0.1	-0.1	0	0.1
S	0.2	0.1	-0.1	-0.5	0.2	-0.6	-0.1	0.5	0.1	-0.2	-0.3	-0.5	0.2	0.8	0.1	0.1	0.5	0.2	-0.1	0.4
T	0.3	0	0.1	0.1	0.2	-0.2	0.8	-0.1	0	-0.1	0	-0.3	-0.2	-0.3	-0.4	0.5	0.3	-0.5	0.3	0.3
G	-0.1	-0.3	0.3	0.1	-0.1	0.2	-0.1	-0.1	0.2	-0.1	-0.1	-0.1	-0.1	0.1	-0.1	0.7	-0.1	0.7	-0.2	-0.8
P	-0.3	0.1	-0.5	-0.1	-0.3	0.2	0	0	0	0	0	0.1	0.1	0	0.2	-0.1	-0.1	0	0	-0.1
C	-0.1	-0.7	-0.1	-0.2	0.3	0.1	0	-0.3	-0.2	-0.1	-0.1	0.3	0.1	-0.5	0.1	-0.2	0	0.2	0.8	0.7

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0174	1.2	-0.2	0.4	0.5	0.8	-0.5	-1.2	-0.4	0	0.3	-0.6	-0.3	-0.1	-0.5	-0.1	1.1	0.8	-0.2	-1.3	1.1
0218	0.9	0.9	1.6	1.8	1.2	1.1	-1	-0.6	-0.8	-1.2	-1.1	-0.5	-1	-1.4	-0.6	0.6	0.2	0.5	-0.5	0.1

Select residue pair below:

i_j	Score	Prob
0184_0218	1.720	1.00
0186_0218	1.173	0.98
0174_0218	1.009	0.93
0218_0230	0.859	0.82
0172_0218	0.806	0.76
0192_0218	0.673	0.56

Local Interactions:

i_j	Score	Prob
0218_0220	0.756	0.69
0218_0219	0.722	0.64
0216_0218	0.579	0.40

See all coupling residues
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