OPENSEQ.org -1516281329- GREMLIN Submission

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mep50

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Coupling matrix for [T:0079] and [V:0083]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	-0.5	0.2	0.1	0.2	0	-0.4	0.3	0.5	-0.5	0.4	-0.3	-0.3	-0.5	-0.1	0.7	0.1	0.2	-0.6	0.2	0
F	0	0	0.2	0.3	0.5	-0.3	-0.2	0	0.7	-0.2	0	-0.1	-0.5	-0.1	-0.3	-0.7	0	0.4	0.6	-0.3
I	0.6	-0.3	0.4	0.2	-0.1	-0.3	-0.2	0.2	0.1	-0.1	0.7	-0.2	0.4	-0.4	-0.5	0.4	-0.5	-0.5	0	-0.2
L	0.5	0.2	0.1	-0.1	-0.1	-0.4	-0.3	-0.7	0.4	-0.1	-0.2	0.1	0.1	0	-0.6	0.2	0.4	0	0.5	0.5
V	0	0.2	0.1	0.1	0.1	-0.2	0	-0.6	0.5	0.3	0.2	-0.4	1	-0.6	-0.1	-0.2	0.1	-0.1	0.1	-0.4
M	0.2	-0.2	0	-0.2	-0.1	0.9	-0.1	-0.2	0.1	-0.1	-0.1	-0.1	-0.1	0.1	0	0	-0.2	0	-0.1	0
W	0.1	-0.1	-0.5	-0.2	0.4	-0.1	0	-0.1	0	0	0	-0.1	0.1	-0.1	-0.1	-0.1	0.1	0.1	-0.2	-0.2
Y	-0.4	-0.3	-0.2	-0.3	0.2	-0.2	-0.1	0.4	0.3	-0.1	0.1	0.5	-0.1	0.3	0.8	-0.2	-0.2	-0.2	-0.1	-0.1
D	-0.1	-0.2	0.2	-0.2	-0.5	-0.3	-0.1	0.3	-0.2	0.2	-0.2	0.3	-0.4	1.1	-0.3	0.1	-0.1	0.3	0.2	-0.4
E	0	-0.1	0.3	-0.1	0	-0.1	0.2	0.4	-0.5	0	-0.3	-0.1	0.3	0.7	0.1	-0.1	0.3	-0.2	0.1	0.1
K	-0.2	0.7	0.2	-0.5	0	0.5	-0.2	0.3	-0.1	-0.1	0.3	0.2	0.4	-0.5	0.3	-0.4	-0.2	-0.6	-0.1	-0.1
R	-0.1	0.4	0	-0.3	0	0.9	0.1	-0.2	-0.1	0	0.1	-0.1	0	-0.1	0.4	0.2	-0.4	0	-1	-0.3
H	0.5	-0.9	0.9	0.2	1.5	1	-0.6	-1.2	-0.3	-0.4	-0.7	-0.6	-1.5	0	-0.4	-0.1	0.4	0.1	0.7	1.1
N	-0.2	0.5	0.3	0.1	-0.1	-0.1	0.1	0.5	-0.3	-0.2	0.2	-0.1	0.2	-0.2	-0.1	0.3	0.3	-0.4	0	-0.2
Q	-0.2	0.1	0.3	-0.1	0	0.9	-0.2	0.2	-0.1	0.1	-0.2	0.4	-0.4	-0.2	0.2	-0.3	0.5	0	-0.1	-0.3
S	-0.4	0.6	-0.2	0.4	-0.3	-0.1	-0.2	0	-0.1	-0.2	-0.2	0.3	0.2	0	-0.4	0.1	-0.1	0.6	0.4	0.8
T	-0.1	0.3	-0.6	0.4	-0.4	-0.4	-0.2	0.1	0.3	-0.1	-0.3	-0.1	1	0	0.1	-0.1	0	0.4	-0.1	0.2
G	-0.2	0.6	0	0.2	0.2	-0.1	0.8	-0.3	-0.3	-0.6	0.9	0.1	-0.1	-0.1	-0.9	0.2	-0.2	0.7	0.2	-0.4
P	-0.2	-0.3	0	0.6	-0.2	-0.1	-0.1	-0.2	-0.1	0.4	-0.3	0.2	-0.1	-0.1	1	0.3	0.3	-0.2	-0.5	0.4
C	0.8	-0.2	0	-0.1	0.4	-0.8	-0.2	0.5	-0.1	-0.2	0	0.4	-0.2	-0.2	-0.5	0.6	-0.8	-0.2	-0.3	-0.4

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0079	0.3	-0.3	-0.4	0.4	0.2	-0.8	-1.5	-0.2	0.3	0.3	0.1	0.1	-0.5	0	-0.1	0.9	0.6	0.5	0.3	-0.5
0083	1	0.5	1.9	0.8	2.1	-0.6	-1.6	-0.5	-0.6	-1	-1.2	-0.7	-0.6	-0.6	-0.7	0.6	0.5	0	0.9	0.2

Select residue pair below:

i_j	Score	Prob
0079_0096	1.749	1.00
0079_0098	1.415	1.00
0079_0083	1.326	0.99
0079_0104	1.048	0.94
0079_0100	0.886	0.85
0076_0079	0.618	0.47
0079_0106	0.592	0.42

Local Interactions:

i_j	Score	Prob
0078_0079	1.600	1.00
0079_0080	1.138	0.97
0077_0079	1.006	0.93

See all coupling residues
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