OPENSEQ.org -1516281329- GREMLIN Submission

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mep50

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Coupling matrix for [Y:0036] and [L:0313]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0.2	0.6	0.4	0.2	0.5	-0.1	0.4	-0.1	-0.1	-0.1	-0.1	-0.2	-0.2	-0.1	-0.2	-0.2	0.2	-0.7	-0.1	-0.2
F	0.4	-0.4	0.1	0	0.1	0.3	0.1	-1.2	0.2	-0.3	0.3	1	-0.5	-0.3	0.8	-0.1	0	0.1	0	-0.1
I	0.3	0.5	0.5	0.3	0.4	0.4	-0.5	0.2	-0.2	-0.1	-0.2	-0.2	-0.4	-0.2	-0.4	-0.1	0.1	-0.1	0	-0.1
L	0.1	0.3	0.4	0.2	0.3	0.2	-0.2	0.6	0	-0.1	-0.2	0.3	0.2	0.2	-0.2	-0.6	-0.2	0.1	-0.2	-0.7
V	-0.1	0.8	0.5	0.2	0.3	0	0.7	0.4	-0.2	-0.2	0	-0.4	1	-0.3	-0.5	-0.6	-0.2	-0.4	-0.2	-0.5
M	0.3	-0.7	0.4	0.2	0.2	-0.1	-0.1	-0.3	0	0	-0.1	-0.1	-0.1	0.2	-0.2	0	-0.1	-0.4	0	0.6
W	0.6	-0.3	-0.4	0.3	0	0	-0.2	-0.7	-0.3	0.1	-0.3	-0.3	-0.3	0.4	0.4	0.6	0.7	0	0	0.2
Y	0.2	-0.4	-0.1	0	0	0.2	-0.2	-0.1	-0.2	-0.1	-0.2	0.1	-0.5	-0.1	-0.3	0.3	0.2	1.1	-0.2	0.1
D	0.1	-0.1	-0.4	-0.2	0.1	-0.1	0	-0.1	0	0	0	0	0	0	0	-0.1	0.2	0.1	0	-0.1
E	-0.1	0.4	-0.1	-0.1	-0.1	-0.1	0	-0.1	0	0	0	0	0	0	0	-0.1	-0.1	-0.1	0	0.1
K	-0.3	-0.2	0	0.4	-0.3	-0.2	0	0.1	0	0	0	0	0.2	0	0	0	-0.1	-0.1	0	-0.1
R	-0.4	-0.6	-0.2	0.3	-0.2	0	-0.1	0.9	0	0	0	0	-0.1	0	-0.1	0	0.1	0.5	0	-0.2
H	-0.3	-0.1	-0.4	-0.1	0.1	-0.2	-0.1	-0.3	0	0	0	-0.1	-0.1	0	-0.1	0.9	0	-0.2	0	0.3
N	-0.4	-0.4	-0.4	0.3	-0.3	-0.2	0	-0.1	0.2	0	0.2	0	0	0	0	0.2	-0.1	0.8	0	0.3
Q	0	0.1	-0.4	0.3	-0.7	-0.2	-0.1	0.8	0	0	0	-0.1	0	0.2	-0.1	-0.2	-0.1	-0.2	0	0.2
S	0	-0.1	-0.1	-0.3	0.2	-0.1	0.1	-0.2	-0.1	0	-0.1	-0.1	0.1	-0.1	0.1	0.6	0.2	0.1	0.2	0.1
T	-0.3	0.9	0.5	0.1	0.1	0.3	-0.2	0	0	-0.1	-0.1	-0.1	0.3	-0.1	-0.1	-0.5	-0.2	-0.5	-0.1	0.3
G	0.2	0.5	-0.1	-0.1	-0.3	0.1	0	0.1	0	0	0	0	0	0	0	-0.1	-0.1	0.3	0	-0.1
P	0	0.5	0.1	-0.6	-0.1	-0.4	-0.1	0.4	0	0	0	-0.1	0.2	0	0.2	0.1	0.1	0.2	0	0
C	0.4	-0.5	0.4	-0.1	0.4	-0.1	0.1	0.2	0	0	0	-0.1	-0.1	-0.1	-0.1	-0.2	-0.3	-0.3	0	0.2

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0036	0.3	1.4	0.6	1	1.1	0	0.4	0.3	-1	-0.8	-0.5	-0.3	-0.5	-0.6	-0.6	0.2	0.5	-0.5	-0.3	-0.2
0313	0.8	1.6	2.2	2.8	2.1	0.6	-0.9	0.4	-1.4	-1.7	-1.2	-1.3	-0.8	-1	-1.7	-0.1	0.1	-0.6	-1.3	0.1

Select residue pair below:

i_j	Score	Prob
0313_0324	1.122	0.97
0036_0313	0.640	0.50
0304_0313	0.578	0.40

Local Interactions:

i_j	Score	Prob
0313_0314	1.235	0.98
0312_0313	0.878	0.84
0311_0313	0.780	0.73

See all coupling residues
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