OPENSEQ.org -1516281329- GREMLIN Submission

May 4, 2021 - We are working on upgrading the webserver, some pages may not work.

mep50

Return to Main Page

Instructions

Use the menu to the right to browse the coupling matrix.

Coupling matrix for [R:0035] and [T:0304]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0.6	0	-0.1	0.5	0.4	0.2	0.5	-0.2	-0.3	-0.2	0.1	0.1	-0.6	-0.4	0	0	0.2	-0.2	0.3	0
F	-0.2	0.2	-0.2	-0.2	-0.3	0.1	-0.1	-0.1	0.1	-0.2	-0.2	0.1	-0.3	0.7	0	-0.3	0	0.4	0.5	-0.1
I	0	-0.3	-0.1	-0.3	0.2	-0.1	-0.1	-0.1	0	-0.4	-0.3	-0.1	0.6	0.2	0.6	0.5	0.2	-0.1	0.1	-0.4
L	0.2	0.2	0.4	-0.4	0.1	-0.1	-0.2	0.7	0	0.5	-0.7	-0.3	-0.5	0.1	-0.2	0.2	0.2	0.1	-0.1	-0.1
V	0.4	-0.4	0.4	0.2	0.6	0.2	0.1	-0.7	-0.1	-0.5	0	0.2	-0.1	-0.3	0.1	0.1	0.1	-0.1	-0.2	0.1
M	0	-0.1	0.6	0.1	0.2	0.1	0	0.3	-0.1	-0.2	-0.1	-0.1	-0.1	-0.1	-0.2	0	-0.2	-0.1	-0.1	-0.2
W	0	0	0.2	-0.1	0	0	0	0	-0.1	0.5	-0.1	-0.2	-0.1	-0.1	0.1	-0.2	-0.1	-0.1	0	-0.2
Y	-0.3	-0.1	0.2	0	0.2	-0.1	0	-0.1	-0.5	0	0	0.1	-0.3	1.3	0	0.4	-0.2	-0.4	0	0.2
D	0.2	-0.5	0.3	0.2	-0.1	0	-0.1	-0.1	-1.4	-0.7	1.1	0.9	0.1	-0.5	-0.2	0.1	-0.1	0.3	-0.1	0.1
E	-0.1	0.3	0.3	-0.4	0	-0.2	-0.2	-0.6	-0.2	-0.2	0.9	0.6	0.4	0.1	-0.5	0	0	0	0	0.5
K	0.1	-0.5	-0.2	-0.3	0.1	-0.2	-0.3	0.2	1.2	0.4	-0.4	-0.8	0.7	-0.2	-0.2	0.1	0	0.2	-0.2	-0.2
R	0	-0.1	-0.3	0.5	-0.1	-0.5	-0.3	-0.6	1.1	0.6	-0.6	-0.5	0.7	-0.6	0.2	0	0	0	0	-0.3
H	0.3	0.1	-0.4	-0.8	-0.2	0.1	-0.1	0.9	0	0.4	-0.7	-0.3	-0.4	-0.2	-0.3	0.3	0.2	1.2	0	-0.1
N	-0.2	-0.3	-0.1	-0.2	-0.3	0	-0.1	-0.2	0	0.2	0.2	-0.1	-0.3	1	0.5	-0.1	0.2	-0.3	-0.1	0.1
Q	-0.1	0.3	-0.7	0	-0.3	-0.5	0.4	0.3	0.5	0.2	-0.2	-0.5	0.4	0.1	0.4	0.2	-0.1	0.2	-0.2	-0.1
S	0	0.5	0.2	0.4	0.1	0.3	-0.2	-0.7	0.1	0.2	0.1	0	-0.3	-0.4	-0.1	0	0	-0.4	0	0.4
T	0.2	-0.4	0.3	0.4	0.2	0	-0.1	0.6	-0.3	-0.3	0	-0.1	0.1	-0.1	-0.1	-0.1	0.2	0.1	-0.3	0.1
G	0.2	-0.5	-0.4	-0.1	0.2	-0.1	0.1	-0.2	-0.2	0.1	-0.1	0.3	0.9	0.1	0.1	0	0.1	-0.1	-0.1	-0.2
P	-0.4	0.4	0.3	-0.2	0.1	-0.1	0	-0.1	0	-0.2	0.3	0.6	-0.2	-0.1	-0.4	-0.5	0.2	0	0	0
C	0.1	0.3	0	0.5	0.2	0.8	-0.1	0.4	-0.7	-0.4	0.3	0	-0.5	-0.6	0	-0.1	-0.3	-0.3	-0.2	0.6

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0035	1.2	0.1	0.4	0.5	0.7	-0.6	-1.4	-0.4	-0.3	0.1	-0.3	-0.1	-0.2	-0.2	-0.1	1	1	-0.1	-0.5	0.4
0304	1.4	-0.7	0.4	0	1	-0.6	-1.5	-0.5	0.4	0.1	-0.3	0.7	-0.2	-0.2	0	1	0.7	0	-1.2	0.4

Select residue pair below:

i_j	Score	Prob
0035_0087	1.980	1.00
0035_0086	1.252	0.99
0035_0304	1.043	0.94
0035_0088	0.753	0.69
0035_0044	0.561	0.37

Local Interactions:

i_j	Score	Prob
0034_0035	1.098	0.96
0033_0035	0.882	0.84
0035_0036	0.781	0.73

See all coupling residues
Download raw data

Page generated in 0.0178 seconds.