OPENSEQ.org -1516281329- GREMLIN Submission

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Coupling matrix for [R:0035] and [T:0087]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0.6	0.1	0.6	0.3	0.6	0.1	0.1	0.1	0.3	0.1	-0.3	-0.7	-0.1	-0.7	-0.3	0.1	0.2	0	-0.4	-0.2
F	-0.1	0.3	0	-0.1	0.1	0.1	-0.1	0.1	0.1	-0.1	-0.2	-0.6	0	-0.3	-0.6	0	-0.3	0.5	0.2	0.1
I	0.4	-0.4	0.4	0.1	0.3	-0.3	-0.1	-0.1	0.2	-0.5	-0.3	0.4	-0.6	0.4	-0.1	0.1	0.2	0.1	0	0.1
L	0.3	0.2	0.1	0.7	-0.1	-0.1	0	0.1	0	-0.2	-0.4	-0.3	0.2	0	-0.3	-0.2	0.2	0.3	-0.3	0
V	0.5	0.7	0.7	0.2	0.9	0	0	-0.5	0.2	-0.7	0	-0.6	-0.4	-0.3	-0.7	0.1	0.2	-0.3	-0.2	0.3
M	-0.1	-0.2	-0.2	-0.4	0.1	-0.2	0	0.3	0.8	-0.1	0.1	0.2	0	-0.3	-0.3	-0.4	0.1	0.2	-0.1	-0.1
W	-0.4	0	-0.1	-0.1	0.3	0	0	0	-0.1	0.1	-0.2	0.2	-0.1	-0.1	0.2	-0.4	0	0.1	0	-0.2
Y	-0.1	-0.2	0.1	0	-0.2	0.1	0	-0.1	-0.3	-0.4	0.2	0.3	-0.2	-0.1	0.8	0.1	-0.3	-0.2	0.2	0.3
D	-0.4	0	-0.2	0	-0.3	0.4	0.4	-0.5	-1.1	-0.9	1.7	1.2	0	0	0.4	0.3	0	-0.3	-0.3	-0.3
E	0.1	-0.1	-0.4	-0.1	-0.5	0.1	-0.1	-0.1	-0.6	-1	0.9	0.7	0.8	0.2	-0.1	0.7	0.3	0.2	-0.1	-0.4
K	-0.1	-0.2	0	-0.2	-0.8	-0.7	0.1	-0.4	1.6	1	-1.1	-0.9	0.3	0.1	0.3	0.2	0.2	-0.1	0.2	0.5
R	0.2	0	-0.5	0.1	-0.2	-0.3	0.1	-0.1	1.2	1	-1	-0.3	-0.5	0.2	-0.1	-0.3	0.2	-0.2	-0.1	0.7
H	-0.3	0.6	-0.1	0.2	-0.4	-0.5	-0.1	0	-0.3	-0.5	0.4	1.7	0.2	0.1	0.1	0	0	-0.1	-0.2	-0.6
N	-0.6	0	0.1	-0.1	0.1	0.7	-0.1	-0.1	-0.6	0	0.1	-0.1	0.3	1.2	-0.1	0.2	-0.5	-0.2	-0.1	0
Q	0.1	-0.8	0.1	0.3	0.2	-0.3	-0.3	-0.1	0	0	0	0.4	0.2	-0.1	0.9	0.3	-0.4	-0.5	0.1	-0.2
S	0.1	0.1	0.1	0.1	0.1	-0.1	-0.2	0.1	0	0.9	-0.1	-0.3	0.3	-0.2	0.3	0.1	0	-0.2	0	0
T	0.2	-0.1	0.4	0.3	0.4	0.7	-0.3	-0.3	0.1	0.3	0	-0.2	-0.4	-0.2	0.2	-0.1	0	0.1	0	-0.2
G	0	-0.4	-0.6	-0.1	-0.2	0.2	-0.2	0.7	-0.5	0.5	0.1	-0.3	0.7	-0.1	0.1	-0.5	0.3	0.2	0.2	-0.3
P	-0.3	-0.1	0	0	0.6	-0.1	0	-0.1	-0.2	0.2	0	-0.2	-0.2	-0.1	-0.3	0.2	-0.1	0.5	0	0.1
C	0.2	0.4	0	-0.1	-0.2	0	0	0.1	0	0	-0.1	-0.4	-0.3	0.2	-0.2	0	0.3	0.2	0.1	0.6

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0035	1.2	0.1	0.4	0.5	0.7	-0.6	-1.4	-0.4	-0.3	0.1	-0.3	-0.1	-0.2	-0.2	-0.1	1	1	-0.1	-0.5	0.4
0087	0.8	-0.3	0.4	0.6	0.9	-0.5	-1.3	-0.6	0.2	0.3	-0.3	-0.2	0.1	-0.5	0.1	0.9	0.9	0.1	-1.3	0.8

Select residue pair below:

i_j	Score	Prob
0035_0087	1.980	1.00
0035_0086	1.252	0.99
0035_0304	1.043	0.94
0035_0088	0.753	0.69
0035_0044	0.561	0.37

Local Interactions:

i_j	Score	Prob
0034_0035	1.098	0.96
0033_0035	0.882	0.84
0035_0036	0.781	0.73

See all coupling residues
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