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OPENSEQ.org

YDCN - YDCT
UniProt: P77626 - P77795
Length: 515
Sequences: 371
Seq/Len: 0.74
I_Prob: 0.00

YDCN - Uncharacterized HTH-type transcriptional regulator YdcN
Paralog alert: 0.63 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: PUUR YDCN
YDCT - Uncharacterized ABC transporter ATP-binding protein YdcT
Paralog alert: 0.85 [within 20: 0.14] - ratio of genomes with paralogs
Cluster includes: ARTP BTUD CCMA CYSA DDPD DDPF DPPD DPPF FBPC FECE FEPC FHUC FTSE GLNQ GLTL HISP LIVF LIVG LOLD LPTB MALK METN MLAF MODC NIKD NIKE OPPD OPPF PHNC PHNK PHNL POTA POTG PROV PSTB SAPD SAPF SSUB SUFC TAUB THIQ UGPC YADG YBBA YBBL YCJV YDCT YECC YEHX YHDZ YNJD ZNUC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
27_A 23_V 1.31 0.00
33_S 332_P 1.27 0.00
27_A 208_F 1.03 0.00
90_L 213_I 0.96 0.00
40_I 155_V 0.95 0.00
134_L 220_R 0.88 0.00
40_I 35_M 0.88 0.00
12_L 91_M 0.87 0.00
13_K 277_I 0.87 0.00
142_T 189_I 0.86 0.00
131_Q 318_G 0.84 0.00
37_L 66_K 0.83 0.00
106_M 60_A 0.82 0.00
13_K 65_G 0.82 0.00
156_T 145_I 0.82 0.00
123_E 135_L 0.81 0.00
8_L 200_S 0.81 0.00
142_T 97_V 0.81 0.00
51_T 319_Q 0.80 0.00
170_H 19_A 0.80 0.00
48_T 5_V 0.79 0.00
132_L 91_M 0.79 0.00
153_A 263_I 0.79 0.00
43_N 49_L 0.78 0.00
21_W 98_A 0.78 0.00
31_G 84_D 0.77 0.00
73_A 145_I 0.77 0.00
15_L 98_A 0.76 0.00
37_L 110_Q 0.76 0.00
166_T 107_N 0.76 0.00
30_T 109_K 0.75 0.00
131_Q 127_V 0.75 0.00
134_L 8_D 0.75 0.00
81_Q 143_V 0.75 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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