May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

PTPB1 - PTPC1
UniProt: P42909 - P42910
Length: 425
Sequences: 704
Seq/Len: 1.74
I_Prob: 0.03

PTPB1 - N-acetylgalactosamine-specific phosphotransferase enzyme IIB component 1
Paralog alert: 0.84 [within 20: 0.20] - ratio of genomes with paralogs
Cluster includes: PTPB1 PTPB2
PTPC1 - N-acetylgalactosamine permease IIC component 1
Paralog alert: 0.85 [within 20: 0.15] - ratio of genomes with paralogs
Cluster includes: PTNC PTPC1
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
26_S 196_L 1.27 0.03
105_V 234_G 1.02 0.01
11_I 110_V 1.02 0.01
83_F 150_S 0.96 0.01
114_E 130_K 0.92 0.01
117_K 34_I 0.92 0.01
37_D 57_T 0.92 0.01
148_V 96_A 0.91 0.01
53_T 219_Y 0.91 0.01
131_T 231_L 0.91 0.01
122_K 115_Y 0.90 0.01
52_I 234_G 0.88 0.01
147_D 78_A 0.88 0.01
53_T 37_C 0.86 0.01
122_K 69_G 0.85 0.01
36_V 136_A 0.85 0.01
6_I 235_F 0.85 0.01
105_V 226_L 0.84 0.01
151_D 53_T 0.84 0.01
133_L 36_V 0.84 0.01
39_V 48_Q 0.84 0.01
87_R 186_G 0.84 0.01
114_E 136_A 0.83 0.01
107_V 16_V 0.83 0.01
148_V 44_L 0.83 0.01
138_Q 168_Q 0.83 0.01
98_G 164_Q 0.83 0.01
150_G 110_V 0.82 0.01
87_R 69_G 0.81 0.01
72_V 227_P 0.81 0.01
131_T 120_L 0.80 0.01
83_F 158_L 0.80 0.01
22_V 62_A 0.79 0.01
65_T 170_L 0.79 0.01
129_D 21_I 0.79 0.01
35_V 70_V 0.78 0.01
97_E 10_L 0.78 0.01
145_I 196_L 0.78 0.01
135_F 135_A 0.78 0.01
89_P 122_M 0.76 0.01
111_H 16_V 0.76 0.01
16_V 218_C 0.76 0.01
35_V 75_P 0.76 0.01
15_L 102_P 0.76 0.01
43_D 125_A 0.75 0.01
35_V 198_L 0.75 0.01
74_G 99_L 0.75 0.01
111_H 156_A 0.75 0.01
37_D 51_L 0.75 0.01
77_A 171_V 0.75 0.01
66_I 233_A 0.75 0.01
44_D 133_D 0.75 0.01
141_V 196_L 0.74 0.01
154_E 130_K 0.74 0.01
42_N 48_Q 0.74 0.01
148_V 70_V 0.74 0.01
107_V 220_I 0.73 0.01
4_P 140_L 0.73 0.01
131_T 221_Q 0.73 0.01
117_K 128_C 0.73 0.01
107_V 99_L 0.73 0.01
79_H 5_T 0.72 0.01
102_L 121_F 0.72 0.01
113_S 34_I 0.72 0.01
69_T 215_L 0.72 0.01
36_V 184_V 0.72 0.01
70_I 87_W 0.72 0.01
42_N 127_K 0.72 0.01
36_V 82_T 0.72 0.01
29_G 30_L 0.71 0.01
46_Q 64_L 0.71 0.01
97_E 93_A 0.71 0.00
111_H 69_G 0.71 0.00
28_I 101_L 0.71 0.00
63_F 112_L 0.70 0.00
43_D 173_A 0.70 0.00
59_F 142_W 0.70 0.00
39_V 44_L 0.70 0.00
40_V 229_A 0.69 0.00
134_R 166_A 0.69 0.00
84_L 29_F 0.69 0.00
70_I 178_L 0.69 0.00
30_A 178_L 0.69 0.00
73_I 84_V 0.69 0.00
135_F 237_V 0.69 0.00
47_Q 66_P 0.69 0.00
29_G 95_T 0.69 0.00
150_G 183_E 0.69 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 1.8759 seconds.