May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

MTOX - MURJ
UniProt: P40874 - P0AF16
Length: 883
Sequences: 531
Seq/Len: 0.62
I_Prob: 0.00

MTOX - N-methyl-L-tryptophan oxidase
Paralog alert: 0.81 [within 20: 0.13] - ratio of genomes with paralogs
Cluster includes: DADA LHGO MTOX PUUB
MURJ - Probable peptidoglycan biosynthesis protein MurJ
Paralog alert: 0.92 [within 20: 0.16] - ratio of genomes with paralogs
Cluster includes: DINF MDTK MURJ RFBX WZXC WZXE YEEO YGHQ
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
197_I 242_V 1.06 0.00
17_A 75_Q 1.03 0.00
4_D 332_L 1.00 0.00
165_A 420_L 0.96 0.00
32_D 412_L 0.95 0.00
193_A 253_F 0.95 0.00
354_A 97_V 0.94 0.00
115_E 153_T 0.93 0.00
115_E 420_L 0.91 0.00
164_C 298_G 0.90 0.00
77_H 369_V 0.89 0.00
175_I 93_L 0.87 0.00
352_D 101_A 0.86 0.00
7_I 400_A 0.86 0.00
207_L 93_L 0.85 0.00
8_I 165_T 0.85 0.00
166_Q 257_L 0.85 0.00
155_W 389_V 0.84 0.00
323_L 170_S 0.84 0.00
294_N 165_T 0.84 0.00
184_I 150_I 0.84 0.00
213_V 100_V 0.83 0.00
193_A 412_L 0.83 0.00
185_E 350_T 0.83 0.00
300_G 410_L 0.82 0.00
33_A 100_V 0.82 0.00
197_I 184_P 0.82 0.00
172_V 173_G 0.82 0.00
7_I 141_I 0.81 0.00
343_A 303_Y 0.81 0.00
199_C 393_L 0.81 0.00
164_C 323_V 0.81 0.00
205_K 386_I 0.81 0.00
159_A 361_L 0.80 0.00
7_I 419_C 0.80 0.00
124_A 210_K 0.80 0.00
260_I 420_L 0.80 0.00
36_P 143_L 0.80 0.00
297_P 68_L 0.79 0.00
7_I 323_V 0.79 0.00
347_G 319_L 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.9481 seconds.