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EFTU2 - NUSG
UniProt: P0CE48 - P0AFG0
Length: 575
Sequences: 499
Seq/Len: 0.88
I_Prob: 0.00

EFTU2 - Elongation factor Tu 2
Paralog alert: 0.35 [within 20: 0.04] - ratio of genomes with paralogs
Cluster includes: CYSN EFTU1 EFTU2
NUSG - Transcription antitermination protein NusG
Paralog alert: 0.28 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: NUSG RFAH
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3j3az:YContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
284_R 83_V 1.38 0.00
52_N 63_K 1.37 0.00
47_F 152_D 1.36 0.00
140_M 12_V 1.19 0.00
80_V 175_F 1.19 0.00
152_M 57_R 1.16 0.00
263_R 23_A 1.06 0.00
386_A 43_M 1.05 0.00
367_I 65_F 1.05 0.00
47_F 136_V 0.99 0.00
269_G 49_V 0.98 0.00
222_S 88_R 0.97 0.00
222_S 28_E 0.97 0.00
313_S 138_D 0.97 0.00
15_V 72_Q 0.95 0.00
140_M 159_K 0.94 0.00
369_M 49_V 0.94 0.00
238_K 148_V 0.93 0.00
15_V 85_S 0.93 0.00
162_D 136_V 0.93 0.00
181_G 26_L 0.93 0.00
365_H 41_E 0.93 0.00
346_E 71_V 0.92 0.00
342_I 164_I 0.92 0.00
373_L 152_D 0.91 0.00
162_D 152_D 0.91 0.00
37_A 110_A 0.90 0.00
120_I 21_R 0.90 0.00
374_R 151_V 0.90 0.00
284_R 26_L 0.90 0.00
287_I 62_R 0.89 0.00
255_T 35_M 0.89 0.00
361_V 128_F 0.88 0.00
73_P 154_E 0.88 0.00
206_A 77_D 0.88 0.00
191_E 106_K 0.88 0.00
66_S 59_K 0.87 0.00
291_Q 63_K 0.87 0.00
21_V 179_E 0.86 0.00
266_L 155_K 0.85 0.00
222_S 25_S 0.85 0.00
114_P 56_Q 0.85 0.00
347_G 26_L 0.85 0.00
193_A 156_S 0.85 0.00
147_L 165_F 0.85 0.00
64_N 18_F 0.85 0.00
38_K 108_V 0.84 0.00
291_Q 116_Q 0.84 0.00
254_S 175_F 0.83 0.00
42_G 156_S 0.83 0.00
89_V 61_E 0.83 0.00
325_K 157_R 0.83 0.00
127_G 51_E 0.83 0.00
43_A 44_V 0.82 0.00
120_I 65_F 0.82 0.00
228_V 85_S 0.82 0.00
222_S 103_I 0.82 0.00
228_V 88_R 0.82 0.00
241_E 171_V 0.81 0.00
255_T 53_R 0.81 0.00
46_A 170_P 0.81 0.00
107_A 63_K 0.81 0.00
196_L 103_I 0.81 0.00
293_L 41_E 0.81 0.00
57_K 31_K 0.81 0.00
163_F 50_V 0.81 0.00
282_I 10_Y 0.81 0.00
191_E 115_L 0.81 0.00
282_I 50_V 0.80 0.00
287_I 88_R 0.80 0.00
283_K 164_I 0.80 0.00
371_D 147_V 0.80 0.00
273_E 172_E 0.80 0.00
171_V 155_K 0.80 0.00
392_V 42_V 0.80 0.00
107_A 57_R 0.80 0.00
65_T 57_R 0.80 0.00
222_S 40_G 0.79 0.00
42_G 26_L 0.79 0.00
167_D 83_V 0.79 0.00
21_V 154_E 0.79 0.00
15_V 78_A 0.78 0.00
370_D 111_I 0.78 0.00
41_G 178_V 0.78 0.00
64_N 46_T 0.78 0.00
284_R 39_F 0.78 0.00
269_G 164_I 0.78 0.00
89_V 69_V 0.78 0.00
48_D 41_E 0.78 0.00
215_I 133_M 0.78 0.00
313_S 69_V 0.78 0.00
156_E 12_V 0.78 0.00
282_I 56_Q 0.78 0.00
394_S 106_K 0.78 0.00
52_N 132_E 0.77 0.00
34_T 10_Y 0.77 0.00
283_K 49_V 0.77 0.00
241_E 69_V 0.77 0.00
277_V 57_R 0.77 0.00
326_G 58_R 0.77 0.00
34_T 64_F 0.77 0.00
222_S 84_R 0.76 0.00
356_N 141_F 0.76 0.00
222_S 23_A 0.76 0.00
284_R 79_S 0.76 0.00
251_T 84_R 0.76 0.00
32_I 39_F 0.76 0.00
369_M 164_I 0.76 0.00
127_G 124_P 0.76 0.00
287_I 85_S 0.75 0.00
106_V 134_V 0.75 0.00
385_G 173_L 0.75 0.00
15_V 156_S 0.74 0.00
345_P 39_F 0.74 0.00
389_V 82_L 0.73 0.00
141_V 180_K 0.73 0.00
348_V 142_A 0.73 0.00
21_V 156_S 0.73 0.00
282_I 52_I 0.73 0.00
80_V 162_V 0.73 0.00
147_L 104_S 0.73 0.00
144_E 83_V 0.73 0.00
376_A 6_K 0.73 0.00
5_K 18_F 0.73 0.00
160_Q 58_R 0.73 0.00
32_I 163_S 0.73 0.00
196_L 39_F 0.73 0.00
146_L 88_R 0.73 0.00
202_E 65_F 0.73 0.00
245_I 26_L 0.73 0.00
249_K 44_V 0.72 0.00
269_G 27_R 0.72 0.00
66_S 23_A 0.72 0.00
176_L 65_F 0.72 0.00
256_C 145_N 0.72 0.00
57_K 180_K 0.72 0.00
374_R 165_F 0.72 0.00
222_S 144_F 0.72 0.00
391_K 54_G 0.72 0.00
236_I 86_V 0.72 0.00
326_G 60_S 0.72 0.00
374_R 142_A 0.71 0.00
193_A 103_I 0.71 0.00
181_G 132_E 0.71 0.00
112_P 173_L 0.71 0.00
263_R 136_V 0.71 0.00
170_I 103_I 0.71 0.00
199_Y 65_F 0.71 0.00
173_G 21_R 0.71 0.00
61_I 175_F 0.71 0.00
15_V 127_L 0.71 0.00
285_E 24_T 0.71 0.00
130_Y 36_E 0.71 0.00
74_T 110_A 0.71 0.00
201_P 70_L 0.71 0.00
184_E 88_R 0.71 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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