| UniProt: | P0AFW0 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG10839 | ||
| Length: | 162 (161) | ||
| Sequences: | 1652 | ||
| Seq/Len: | 10.26 |
| RFAH
Paralog alert: 0.29 [within 20: 0.01] - ratio of genomes with paralogs Cluster includes: NUSG RFAH |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 18_Q | 22_E | 4.511 | 1.00 | |
| 90_S | 94_H | 4.027 | 1.00 | |
| 27_N | 58_E | 3.001 | 1.00 | |
| 117_I | 160_R | 2.948 | 1.00 | |
| 139_S | 159_F | 2.903 | 1.00 | |
| 34_T | 45_A | 2.844 | 1.00 | |
| 132_E | 140_M | 2.456 | 1.00 | |
| 34_T | 47_S | 2.334 | 1.00 | |
| 114_D | 161_K | 2.11 | 1.00 | |
| 33_I | 48_E | 1.941 | 1.00 | |
| 138_R | 155_K | 1.931 | 1.00 | |
| 17_A | 75_V | 1.851 | 1.00 | |
| 37_K | 48_E | 1.849 | 1.00 | |
| 120_E | 158_E | 1.779 | 1.00 | |
| 59_F | 65_H | 1.73 | 1.00 | |
| 115_K | 127_Q | 1.729 | 1.00 | |
| 28_C | 136_E | 1.687 | 1.00 | |
| 138_R | 153_S | 1.68 | 1.00 | |
| 50_L | 56_F | 1.678 | 1.00 | |
| 21_L | 28_C | 1.662 | 1.00 | |
| 36_E | 43_R | 1.623 | 1.00 | |
| 154_V | 158_E | 1.602 | 1.00 | |
| 32_M | 47_S | 1.553 | 1.00 | |
| 128_A | 141_L | 1.503 | 1.00 | |
| 111_Y | 114_D | 1.46 | 1.00 | |
| 131_T | 142_L | 1.432 | 1.00 | |
| 117_I | 127_Q | 1.42 | 1.00 | |
| 17_A | 55_L | 1.416 | 1.00 | |
| 59_F | 69_I | 1.404 | 0.99 | |
| 39_V | 44_T | 1.401 | 0.99 | |
| 21_L | 69_I | 1.375 | 0.99 | |
| 36_E | 45_A | 1.345 | 0.99 | |
| 13_Q | 74_G | 1.326 | 0.99 | |
| 26_V | 58_E | 1.316 | 0.99 | |
| 10_K | 13_Q | 1.314 | 0.99 | |
| 89_P | 92_V | 1.291 | 0.99 | |
| 51_F | 96_L | 1.288 | 0.99 | |
| 112_P | 133_P | 1.278 | 0.99 | |
| 6_L | 88_V | 1.255 | 0.99 | |
| 62_E | 65_H | 1.248 | 0.99 | |
| 21_L | 29_L | 1.221 | 0.98 | |
| 8_Y | 76_S | 1.218 | 0.98 | |
| 35_L | 48_E | 1.206 | 0.98 | |
| 29_L | 97_S | 1.206 | 0.98 | |
| 91_A | 94_H | 1.204 | 0.98 | |
| 58_E | 90_S | 1.199 | 0.98 | |
| 141_L | 154_V | 1.198 | 0.98 | |
| 51_F | 56_F | 1.184 | 0.98 | |
| 139_S | 156_N | 1.18 | 0.98 | |
| 117_I | 125_G | 1.172 | 0.98 | |
| 93_I | 97_S | 1.171 | 0.98 | |
| 65_H | 69_I | 1.17 | 0.97 | |
| 9_C | 14_L | 1.162 | 0.97 | |
| 21_L | 136_E | 1.161 | 0.97 | |
| 143_L | 152_H | 1.152 | 0.97 | |
| 155_K | 158_E | 1.147 | 0.97 | |
| 116_V | 141_L | 1.143 | 0.97 | |
| 22_E | 28_C | 1.138 | 0.97 | |
| 141_L | 151_K | 1.119 | 0.96 | |
| 8_Y | 77_H | 1.118 | 0.96 | |
| 16_R | 20_H | 1.116 | 0.96 | |
| 25_A | 28_C | 1.112 | 0.96 | |
| 142_L | 149_E | 1.089 | 0.96 | |
| 16_R | 23_R | 1.076 | 0.95 | |
| 80_R | 87_I | 1.074 | 0.95 | |
| 144_N | 149_E | 1.067 | 0.95 | |
| 17_A | 72_T | 1.056 | 0.95 | |
| 38_I | 43_R | 1.051 | 0.94 | |
| 85_P | 123_F | 1.042 | 0.94 | |
| 94_H | 99_Y | 1.024 | 0.93 | |
| 66_T | 70_N | 1.023 | 0.93 | |
| 19_E | 23_R | 1.02 | 0.93 | |
| 88_V | 93_I | 1.019 | 0.93 | |
| 154_V | 159_F | 1.009 | 0.93 | |
| 40_R | 44_T | 1.004 | 0.93 | |
| 115_K | 129_I | 1.002 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2ougA | 4 | 0.9938 | 100 | 0.081 | Contact Map | 0.539 |
| 2jvvA | 1 | 1 | 100 | 0.109 | Contact Map | 0.804 |
| 2lq8A | 1 | 0.9877 | 100 | 0.144 | Contact Map | 0.54 |
| 1m1hA | 1 | 1 | 100 | 0.144 | Contact Map | 0.629 |
| 2xhcA | 1 | 0.9691 | 100 | 0.261 | Contact Map | 0.477 |
| 3p8bB | 2 | 0.8765 | 100 | 0.304 | Contact Map | 0.764 |
| 1nz8A | 1 | 0.642 | 99.9 | 0.416 | Contact Map | 0.457 |
| 3lpeA | 4 | 0.5123 | 99.7 | 0.589 | Contact Map | 0.587 |
| 2e6zA | 1 | 0.3642 | 99 | 0.713 | Contact Map | 0.665 |
| 1nz9A | 1 | 0.3519 | 99 | 0.716 | Contact Map | 0.775 |
Sequence Conservation (Image Generated using WebLogo v3)