May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

YBBO - YCEF
UniProt: P0AFP4 - P0A729
Length: 463
Sequences: 638
Seq/Len: 1.52
I_Prob: 0.00

YBBO - Uncharacterized oxidoreductase YbbO
Paralog alert: 0.88 [within 20: 0.45] - ratio of genomes with paralogs
Cluster includes: BDCA ENTA FABG FABI FOLM HCAB HDHA IDNO KDUD SRLD UCPA YBBO YCIK YDFG YGCW YGFF YGHA YOHF
YCEF - Maf-like protein YceF
Paralog alert: 0.45 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YCEF YHDE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
127_M 151_F 0.98 0.00
142_V 94_K 0.91 0.00
71_E 185_R 0.84 0.00
88_L 143_H 0.82 0.00
193_R 72_C 0.80 0.00
116_S 104_T 0.78 0.00
157_G 131_S 0.77 0.00
204_Q 132_E 0.77 0.00
123_H 103_Y 0.77 0.00
169_W 161_F 0.76 0.00
43_L 90_L 0.73 0.00
186_L 167_R 0.73 0.00
29_L 105_G 0.71 0.00
222_P 95_A 0.71 0.00
50_D 62_D 0.71 0.00
186_L 151_F 0.70 0.00
169_W 151_F 0.70 0.00
142_V 98_N 0.70 0.00
141_I 16_L 0.68 0.00
127_M 161_F 0.68 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.2451 seconds.