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OPENSEQ.org

LPTC - PTSN
UniProt: P0ADV9 - P69829
Length: 354
Sequences: 220
Seq/Len: 0.66
I_Prob: 0.01

LPTC - Lipopolysaccharide export system protein LptC
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: LPTC
PTSN - Nitrogen regulatory protein
Paralog alert: 0.75 [within 20: 0.20] - ratio of genomes with paralogs
Cluster includes: PTFA PTKA PTMA PTSN SGCA ULAC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
94_W 105_D 1.65 0.01
94_W 141_R 1.56 0.01
163_M 59_K 1.50 0.01
128_R 87_F 1.49 0.01
94_W 32_L 1.41 0.01
45_E 94_I 1.31 0.01
153_G 134_K 1.30 0.01
145_S 86_V 1.29 0.01
165_G 55_L 1.27 0.01
152_Y 62_S 1.25 0.01
86_F 84_V 1.23 0.00
94_W 109_A 1.20 0.00
5_R 60_M 1.18 0.00
145_S 36_S 1.17 0.00
131_T 108_F 1.16 0.00
22_I 69_I 1.15 0.00
22_I 13_V 1.15 0.00
83_L 22_R 1.15 0.00
43_K 139_R 1.15 0.00
6_R 20_R 1.15 0.00
127_R 117_T 1.14 0.00
86_F 99_I 1.13 0.00
113_G 44_S 1.12 0.00
151_L 52_E 1.12 0.00
24_M 64_G 1.12 0.00
7_W 71_I 1.12 0.00
32_Q 59_K 1.11 0.00
160_G 134_K 1.10 0.00
101_A 152_I 1.10 0.00
179_R 117_T 1.09 0.00
64_A 88_V 1.09 0.00
153_G 35_I 1.06 0.00
163_M 36_S 1.05 0.00
69_Y 60_M 1.04 0.00
55_E 94_I 1.04 0.00
129_I 94_I 1.03 0.00
21_G 32_L 1.03 0.00
143_V 118_K 1.03 0.00
23_N 69_I 1.03 0.00
145_S 60_M 1.03 0.00
167_L 105_D 1.02 0.00
42_Y 87_F 1.02 0.00
153_G 94_I 1.02 0.00
165_G 105_D 1.02 0.00
11_V 44_S 1.02 0.00
167_L 32_L 1.01 0.00
64_A 53_A 1.00 0.00
115_V 69_I 1.00 0.00
52_Y 86_V 1.00 0.00
49_T 131_L 0.99 0.00
174_L 16_R 0.98 0.00
64_A 31_A 0.98 0.00
119_A 65_I 0.98 0.00
179_R 115_D 0.97 0.00
163_M 119_T 0.97 0.00
79_T 107_L 0.96 0.00
59_S 60_M 0.96 0.00
180_T 107_L 0.96 0.00
178_V 125_S 0.96 0.00
119_A 117_T 0.95 0.00
174_L 64_G 0.95 0.00
173_E 102_Q 0.95 0.00
30_T 94_I 0.95 0.00
83_L 51_F 0.95 0.00
16_V 13_V 0.94 0.00
69_Y 111_L 0.94 0.00
78_F 59_K 0.94 0.00
41_T 54_I 0.94 0.00
92_P 77_E 0.94 0.00
35_V 50_V 0.93 0.00
138_L 35_I 0.93 0.00
54_P 93_P 0.93 0.00
165_G 141_R 0.93 0.00
142_D 143_A 0.92 0.00
67_V 16_R 0.92 0.00
156_F 74_G 0.92 0.00
156_F 60_M 0.92 0.00
16_V 114_A 0.92 0.00
85_T 107_L 0.92 0.00
52_Y 35_I 0.92 0.00
97_K 139_R 0.92 0.00
100_K 107_L 0.91 0.00
15_A 38_L 0.91 0.00
101_A 132_A 0.91 0.00
10_I 52_E 0.91 0.00
40_P 133_D 0.91 0.00
98_A 16_R 0.90 0.00
83_L 59_K 0.90 0.00
148_L 60_M 0.90 0.00
6_R 16_R 0.90 0.00
74_A 62_S 0.90 0.00
17_L 102_Q 0.90 0.00
92_P 154_T 0.90 0.00
167_L 141_R 0.89 0.00
163_M 149_L 0.89 0.00
102_K 154_T 0.89 0.00
105_N 117_T 0.89 0.00
149_V 69_I 0.89 0.00
158_S 106_L 0.88 0.00
23_N 19_T 0.88 0.00
178_V 84_V 0.88 0.00
57_A 10_L 0.88 0.00
23_N 150_Y 0.88 0.00
172_A 143_A 0.88 0.00
6_R 60_M 0.88 0.00
177_K 127_V 0.87 0.00
98_A 45_L 0.87 0.00
127_R 59_K 0.87 0.00
171_N 94_I 0.87 0.00
14_L 16_R 0.86 0.00
111_L 37_E 0.86 0.00
160_G 10_L 0.86 0.00
77_W 87_F 0.86 0.00
94_W 35_I 0.86 0.00
178_V 16_R 0.86 0.00
128_R 92_T 0.86 0.00
129_I 95_A 0.86 0.00
67_V 49_V 0.86 0.00
112_Y 36_S 0.86 0.00
182_Y 109_A 0.85 0.00
60_Y 90_L 0.85 0.00
65_Q 43_L 0.85 0.00
104_T 154_T 0.85 0.00
178_V 82_R 0.85 0.00
73_Q 31_A 0.85 0.00
83_L 153_I 0.84 0.00
79_T 147_E 0.84 0.00
41_T 60_M 0.84 0.00
70_Y 133_D 0.84 0.00
119_A 16_R 0.84 0.00
157_N 135_T 0.84 0.00
153_G 109_A 0.84 0.00
100_K 14_L 0.84 0.00
117_V 102_Q 0.84 0.00
26_E 83_A 0.83 0.00
119_A 116_Q 0.83 0.00
24_M 71_I 0.83 0.00
98_A 142_A 0.83 0.00
13_S 22_R 0.83 0.00
101_A 93_P 0.83 0.00
121_V 59_K 0.83 0.00
182_Y 31_A 0.83 0.00
15_A 15_N 0.83 0.00
89_D 115_D 0.82 0.00
125_Q 132_A 0.82 0.00
85_T 96_F 0.82 0.00
71_S 115_D 0.82 0.00
94_W 99_I 0.82 0.00
5_R 75_K 0.82 0.00
136_I 145_S 0.82 0.00
69_Y 85_G 0.81 0.00
22_I 16_R 0.81 0.00
24_M 36_S 0.81 0.00
175_I 13_V 0.81 0.00
96_V 46_P 0.81 0.00
138_L 86_V 0.81 0.00
148_L 117_T 0.81 0.00
4_A 31_A 0.81 0.00
93_T 36_S 0.81 0.00
52_Y 31_A 0.81 0.00
179_R 11_S 0.81 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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