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OPENSEQ.org

YBBJ - YBBO
UniProt: P0AAS3 - P0AFP4
Length: 421
Sequences: 322
Seq/Len: 0.81
I_Prob: 0.00

YBBJ - Inner membrane protein YbbJ
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YBBJ
YBBO - Uncharacterized oxidoreductase YbbO
Paralog alert: 0.88 [within 20: 0.45] - ratio of genomes with paralogs
Cluster includes: BDCA ENTA FABG FABI FOLM HCAB HDHA IDNO KDUD SRLD UCPA YBBO YCIK YDFG YGCW YGFF YGHA YOHF
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
66_L 54_R 1.24 0.00
62_I 116_S 1.15 0.00
86_D 20_I 1.10 0.00
146_H 20_I 1.08 0.00
137_V 37_R 1.06 0.00
16_L 182_I 1.04 0.00
36_G 130_L 1.03 0.00
103_L 222_P 1.02 0.00
22_A 128_R 0.97 0.00
20_L 125_L 0.94 0.00
15_S 192_I 0.93 0.00
73_K 18_V 0.92 0.00
97_I 179_H 0.92 0.00
113_H 123_H 0.92 0.00
107_L 28_G 0.88 0.00
62_I 25_S 0.88 0.00
116_V 165_A 0.87 0.00
25_M 97_F 0.86 0.00
58_V 126_T 0.85 0.00
137_V 31_S 0.84 0.00
28_G 38_Q 0.84 0.00
23_A 166_L 0.84 0.00
37_V 63_V 0.84 0.00
40_V 129_L 0.84 0.00
35_S 44_A 0.83 0.00
24_E 19_L 0.83 0.00
35_S 112_E 0.83 0.00
140_I 88_L 0.82 0.00
136_E 96_G 0.82 0.00
141_E 37_R 0.82 0.00
138_I 206_D 0.82 0.00
49_V 133_M 0.82 0.00
109_N 182_I 0.81 0.00
145_L 73_V 0.81 0.00
26_L 181_G 0.81 0.00
17_G 133_M 0.81 0.00
68_A 187_I 0.79 0.00
15_S 52_V 0.79 0.00
65_L 77_A 0.79 0.00
123_V 207_K 0.79 0.00
19_L 34_E 0.79 0.00
78_R 71_E 0.78 0.00
103_L 170_S 0.78 0.00
58_V 141_I 0.78 0.00
131_A 35_L 0.78 0.00
112_G 89_Y 0.77 0.00
56_Q 232_A 0.77 0.00
122_P 20_I 0.77 0.00
23_A 20_I 0.77 0.00
133_T 16_K 0.76 0.00
62_I 37_R 0.76 0.00
146_H 126_T 0.76 0.00
14_L 31_S 0.76 0.00
107_L 24_S 0.76 0.00
114_M 64_L 0.76 0.00
55_W 31_S 0.75 0.00
64_T 113_Q 0.75 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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