May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

IHFB - YCBL
UniProt: P0A6Y1 - P75849
Length: 309
Sequences: 242
Seq/Len: 0.80
I_Prob: 0.00

IHFB - Integration host factor subunit beta
Paralog alert: 0.56 [within 20: 0.04] - ratio of genomes with paralogs
Cluster includes: DBHA DBHB IHFA IHFB
YCBL - Uncharacterized protein YcbL
Paralog alert: 0.71 [within 20: 0.06] - ratio of genomes with paralogs
Cluster includes: GLO2 YCBL
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
82_P 137_V 1.40 0.00
43_I 133_T 1.36 0.00
5_E 27_A 1.33 0.00
26_V 179_L 1.10 0.00
69_K 175_I 1.09 0.00
82_P 81_K 1.06 0.00
30_L 74_V 1.06 0.00
29_M 179_L 1.05 0.00
45_I 72_Y 1.03 0.00
29_M 29_V 1.01 0.00
88_D 36_E 1.01 0.00
1_M 27_A 1.00 0.00
30_L 73_G 0.97 0.00
36_T 21_E 0.97 0.00
78_P 167_D 0.95 0.00
18_P 202_R 0.95 0.00
7_I 49_L 0.95 0.00
4_S 191_G 0.95 0.00
31_E 71_H 0.94 0.00
47_G 174_S 0.92 0.00
33_M 199_G 0.92 0.00
45_I 127_L 0.92 0.00
5_E 145_K 0.92 0.00
36_T 68_L 0.91 0.00
41_E 133_T 0.91 0.00
62_R 207_F 0.90 0.00
67_G 136_H 0.90 0.00
16_H 23_T 0.90 0.00
21_T 127_L 0.89 0.00
68_D 140_F 0.88 0.00
37_L 208_L 0.88 0.00
88_D 16_S 0.87 0.00
57_A 123_T 0.87 0.00
31_E 43_D 0.86 0.00
88_D 170_Q 0.86 0.00
40_G 14_N 0.86 0.00
26_V 73_G 0.85 0.00
9_R 127_L 0.85 0.00
75_K 140_F 0.84 0.00
21_T 62_V 0.84 0.00
10_L 42_V 0.84 0.00
10_L 20_C 0.83 0.00
81_K 73_G 0.83 0.00
73_E 119_I 0.83 0.00
16_H 11_F 0.82 0.00
22_V 184_D 0.82 0.00
1_M 34_D 0.82 0.00
27_K 19_W 0.81 0.00
89_R 119_I 0.81 0.00
41_E 65_A 0.81 0.00
39_Q 123_T 0.81 0.00
31_E 18_I 0.80 0.00
82_P 104_P 0.80 0.00
31_E 70_Q 0.80 0.00
79_H 54_L 0.79 0.00
55_Y 77_F 0.79 0.00
22_V 148_I 0.79 0.00
58_P 197_T 0.79 0.00
18_P 46_G 0.79 0.00
18_P 84_E 0.78 0.00
32_H 183_G 0.78 0.00
17_I 27_A 0.78 0.00
83_G 207_F 0.78 0.00
43_I 127_L 0.77 0.00
31_E 99_L 0.77 0.00
26_V 81_K 0.77 0.00
71_E 29_V 0.77 0.00
5_E 206_P 0.77 0.00
41_E 49_L 0.76 0.00
30_L 128_H 0.76 0.00
88_D 50_M 0.76 0.00
2_T 83_D 0.76 0.00
37_L 115_D 0.76 0.00
73_E 49_L 0.76 0.00
47_G 55_T 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.9848 seconds.