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OPENSEQ.org

EFP - EPMA
UniProt: P0A6N4 - P0A8N7
Length: 513
Sequences: 342
Seq/Len: 0.68
I_Prob: 0.00

EFP - Elongation factor P
Paralog alert: 0.28 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: EFP EFPL
EPMA - Elongation factor P--(R)-beta-lysine ligase
Paralog alert: 0.93 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: EPMA SYD SYK1 SYK2 SYN
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2rhqA:BContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
102_D 93_F 1.29 0.00
104_A 99_F 1.23 0.00
131_V 110_P 1.22 0.00
89_T 15_N 1.18 0.00
123_I 51_I 1.15 0.00
111_A 35_V 1.15 0.00
110_Q 181_V 1.14 0.00
174_I 17_L 1.11 0.00
26_A 314_L 1.11 0.00
126_T 114_M 1.11 0.00
168_V 249_F 1.08 0.00
95_A 97_R 1.06 0.00
57_K 248_G 1.05 0.00
87_N 191_L 1.04 0.00
161_V 212_V 1.04 0.00
156_L 39_E 1.03 0.00
19_G 146_S 1.03 0.00
102_D 229_D 1.01 0.00
185_S 50_D 1.00 0.00
68_V 192_L 0.99 0.00
104_A 34_G 0.99 0.00
107_L 245_L 0.99 0.00
168_V 240_Y 0.99 0.00
90_F 272_R 0.98 0.00
147_A 253_T 0.97 0.00
97_A 99_F 0.97 0.00
79_G 313_T 0.96 0.00
60_D 22_I 0.96 0.00
125_V 152_A 0.94 0.00
187_V 56_F 0.94 0.00
43_L 166_K 0.94 0.00
137_D 242_G 0.94 0.00
134_E 318_I 0.94 0.00
101_G 307_L 0.94 0.00
108_L 93_F 0.94 0.00
61_S 295_S 0.92 0.00
38_F 294_C 0.92 0.00
70_M 123_D 0.92 0.00
60_D 147_L 0.91 0.00
168_V 166_K 0.91 0.00
7_N 123_D 0.91 0.00
125_V 128_M 0.91 0.00
110_Q 211_F 0.91 0.00
135_I 177_D 0.90 0.00
135_I 309_L 0.90 0.00
74_Y 38_V 0.90 0.00
115_V 173_A 0.90 0.00
56_F 211_F 0.89 0.00
123_I 93_F 0.89 0.00
110_Q 172_V 0.89 0.00
176_V 107_Y 0.88 0.00
149_T 149_Y 0.88 0.00
188_K 34_G 0.88 0.00
75_L 141_C 0.88 0.00
113_C 249_F 0.87 0.00
15_I 175_K 0.87 0.00
91_E 306_M 0.86 0.00
167_F 143_A 0.86 0.00
114_I 316_E 0.86 0.00
119_N 24_A 0.86 0.00
176_V 215_F 0.86 0.00
100_I 195_L 0.85 0.00
139_D 95_L 0.85 0.00
162_V 192_L 0.85 0.00
51_R 305_V 0.85 0.00
22_Y 212_V 0.85 0.00
187_V 275_P 0.84 0.00
143_K 201_E 0.84 0.00
68_V 113_T 0.84 0.00
123_I 173_A 0.83 0.00
57_K 297_V 0.83 0.00
157_S 308_A 0.83 0.00
132_E 136_Q 0.83 0.00
176_V 92_V 0.82 0.00
45_R 193_Q 0.82 0.00
168_V 287_L 0.82 0.00
51_R 158_E 0.82 0.00
59_T 26_I 0.82 0.00
103_N 212_V 0.82 0.00
86_N 58_T 0.82 0.00
83_H 107_Y 0.82 0.00
111_A 55_P 0.81 0.00
24_V 173_A 0.81 0.00
95_A 295_S 0.81 0.00
89_T 87_A 0.81 0.00
71_N 151_Q 0.81 0.00
47_L 138_V 0.81 0.00
126_T 196_F 0.81 0.00
121_Q 148_S 0.80 0.00
89_T 57_E 0.80 0.00
60_D 207_E 0.80 0.00
94_S 136_Q 0.80 0.00
10_R 147_L 0.80 0.00
69_D 230_H 0.80 0.00
87_N 223_A 0.80 0.00
132_E 109_N 0.80 0.00
24_V 151_Q 0.80 0.00
140_P 84_L 0.80 0.00
71_N 316_E 0.80 0.00
187_V 148_S 0.79 0.00
135_I 187_D 0.79 0.00
185_S 43_M 0.79 0.00
135_I 129_N 0.79 0.00
136_V 227_T 0.79 0.00
48_T 134_L 0.79 0.00
23_A 283_L 0.79 0.00
122_P 71_L 0.79 0.00
52_V 309_L 0.79 0.00
175_K 260_Q 0.79 0.00
29_F 105_G 0.79 0.00
162_V 133_D 0.79 0.00
187_V 246_A 0.79 0.00
135_I 40_T 0.78 0.00
29_F 102_E 0.78 0.00
10_R 16_L 0.78 0.00
100_I 72_W 0.78 0.00
90_F 281_Q 0.78 0.00
174_I 166_K 0.78 0.00
163_K 139_L 0.78 0.00
107_L 200_V 0.78 0.00
137_D 160_D 0.78 0.00
133_L 284_I 0.78 0.00
69_D 97_R 0.77 0.00
60_D 43_M 0.77 0.00
88_E 156_Y 0.77 0.00
113_C 114_M 0.77 0.00
64_G 114_M 0.77 0.00
15_I 249_F 0.77 0.00
82_W 200_V 0.77 0.00
188_K 64_G 0.77 0.00
188_K 315_A 0.77 0.00
6_S 188_R 0.77 0.00
62_A 233_A 0.77 0.00
187_V 255_A 0.77 0.00
118_W 72_W 0.77 0.00
127_P 168_Q 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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