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OPENSEQ.org
YDJI - Uncharacterized protein YdjI
UniProt: P77704 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG13485
Length: 278 (277)
Sequences: 1891
Seq/Len: 6.83
YDJI
Paralog alert: 0.36 [within 20: 0.04] - ratio of genomes with paralogs
Cluster includes: ALF GATY KBAY YDJI
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
160_E 164_R 3.967 1.00
39_E 261_K 3.891 1.00
118_E 121_D 3.472 1.00
109_F 160_E 3.414 1.00
39_E 265_L 3.244 1.00
42_S 273_S 3.236 1.00
11_D 15_K 2.715 1.00
11_D 17_Y 2.705 1.00
193_K 197_D 2.62 1.00
90_H 122_F 2.614 1.00
159_A 163_E 2.604 1.00
35_D 261_K 2.603 1.00
40_A 269_K 2.558 1.00
33_V 44_V 2.546 1.00
188_N 191_V 2.384 1.00
108_D 111_E 2.379 1.00
94_T 122_F 2.279 1.00
38_E 73_T 2.275 1.00
114_R 118_E 2.273 1.00
213_D 270_L 2.211 1.00
174_I 192_V 2.161 1.00
269_K 274_D 2.094 1.00
48_F 97_M 2.079 1.00
117_K 121_D 2.073 1.00
258_K 262_E 2.044 1.00
212_S 215_D 2.043 1.00
109_F 113_I 2.032 1.00
255_E 258_K 2.025 1.00
102_R 115_L 2.011 1.00
40_A 274_D 1.921 1.00
193_K 218_T 1.91 1.00
193_K 222_L 1.852 1.00
93_W 128_I 1.834 1.00
240_A 259_A 1.834 1.00
90_H 94_T 1.815 1.00
159_A 198_A 1.804 1.00
40_A 265_L 1.801 1.00
94_T 126_L 1.801 1.00
10_N 14_N 1.801 1.00
261_K 265_L 1.795 1.00
194_R 197_D 1.786 1.00
124_H 168_D 1.774 1.00
6_R 10_N 1.773 1.00
218_T 221_S 1.734 1.00
8_W 77_I 1.726 1.00
63_H 66_V 1.717 1.00
5_I 77_I 1.716 1.00
189_F 218_T 1.699 1.00
104_A 107_F 1.692 1.00
63_H 67_S 1.681 1.00
121_D 125_P 1.663 1.00
203_L 224_I 1.632 1.00
157_Q 160_E 1.628 1.00
5_I 169_S 1.61 1.00
21_H 47_S 1.605 1.00
117_K 164_R 1.592 1.00
156_D 198_A 1.57 1.00
218_T 222_L 1.559 1.00
268_I 274_D 1.558 0.99
262_E 265_L 1.556 0.99
65_M 78_T 1.529 0.99
124_H 127_G 1.528 0.99
110_E 164_R 1.506 0.99
24_V 46_I 1.505 0.99
213_D 217_K 1.49 0.99
239_V 243_E 1.485 0.99
15_K 276_K 1.45 0.99
109_F 157_Q 1.446 0.99
2_L 98_N 1.439 0.99
31_M 257_R 1.434 0.99
154_D 157_Q 1.409 0.99
34_I 72_A 1.405 0.99
259_A 262_E 1.377 0.98
109_F 164_R 1.375 0.98
122_F 126_L 1.373 0.98
44_V 76_V 1.367 0.98
120_V 130_V 1.363 0.98
13_T 225_A 1.354 0.98
13_T 196_R 1.312 0.98
30_L 68_M 1.309 0.98
34_I 76_V 1.308 0.98
107_F 111_E 1.301 0.98
119_A 130_V 1.268 0.97
266_E 270_L 1.262 0.97
16_H 221_S 1.249 0.97
221_S 272_G 1.235 0.96
38_E 72_A 1.222 0.96
116_T 132_A 1.217 0.96
189_F 222_L 1.215 0.96
110_E 160_E 1.202 0.96
50_T 88_I 1.201 0.96
38_E 41_K 1.2 0.96
262_E 266_E 1.197 0.95
7_Y 11_D 1.193 0.95
25_W 29_M 1.189 0.95
176_N 211_I 1.186 0.95
24_V 30_L 1.18 0.95
213_D 266_E 1.171 0.95
100_L 123_F 1.166 0.95
155_P 198_A 1.166 0.95
230_H 234_C 1.162 0.94
79_H 99_S 1.146 0.94
107_F 115_L 1.142 0.94
35_D 257_R 1.136 0.94
190_E 194_R 1.114 0.93
90_H 126_L 1.113 0.93
67_S 70_Q 1.113 0.93
265_L 269_K 1.111 0.93
220_I 271_F 1.105 0.92
60_D 68_M 1.09 0.92
240_A 243_E 1.085 0.91
30_L 46_I 1.084 0.91
20_A 264_A 1.078 0.91
132_A 167_C 1.072 0.91
195_V 203_L 1.068 0.90
233_L 260_V 1.057 0.90
66_V 70_Q 1.052 0.90
115_L 118_E 1.051 0.90
111_E 114_R 1.048 0.89
110_E 114_R 1.047 0.89
191_V 194_R 1.042 0.89
191_V 195_V 1.04 0.89
24_V 33_V 1.039 0.89
247_Q 250_L 1.036 0.89
190_E 193_K 1.034 0.88
172_V 195_V 1.017 0.87
36_A 40_A 1.014 0.87
22_F 264_A 1.004 0.86
93_W 122_F 1.003 0.86
20_A 260_V 1.001 0.86
100_L 130_V 1 0.86
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
3n9rA80.99641000.043Contact Map0.788
1gvfA211000.044Contact Map0.739
1rvgA40.99281000.045Contact Map0.824
3q94A20.98921000.048Contact Map0.817
2iswA20.98921000.062Contact Map0.772
3pm6A20.99281000.091Contact Map0.791
3elfA111000.096Contact Map0.615
1dosA20.99641000.107Contact Map0.749
3qm3A80.99641000.113Contact Map0.735
3txvA10.97841000.252Contact Map0.319
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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