| UniProt: | P75894 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13855 | ||
| Length: | 196 (190) | ||
| Sequences: | 5499 | ||
| Seq/Len: | 28.94 |
| RUTE
Paralog alert: 0.79 [within 20: 0.04] - ratio of genomes with paralogs Cluster includes: NFNB RUTE YDJA |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 29_S | 32_T | 4.205 | 1.00 | |
| 35_E | 139_L | 3.724 | 1.00 | |
| 30_D | 58_R | 3.056 | 1.00 | |
| 54_I | 128_Q | 2.939 | 1.00 | |
| 36_I | 136_C | 2.84 | 1.00 | |
| 30_D | 34_R | 2.69 | 1.00 | |
| 26_T | 174_Y | 2.592 | 1.00 | |
| 38_A | 41_K | 2.384 | 1.00 | |
| 142_D | 175_G | 2.379 | 1.00 | |
| 133_I | 143_T | 2.324 | 1.00 | |
| 141_L | 174_Y | 2.313 | 1.00 | |
| 53_R | 194_G | 2.262 | 1.00 | |
| 54_I | 85_A | 2.256 | 1.00 | |
| 16_D | 137_R | 2.214 | 1.00 | |
| 32_T | 141_L | 2.039 | 1.00 | |
| 65_R | 157_A | 1.959 | 1.00 | |
| 32_T | 139_L | 1.935 | 1.00 | |
| 40_M | 132_L | 1.933 | 1.00 | |
| 60_A | 64_E | 1.897 | 1.00 | |
| 55_V | 88_A | 1.831 | 1.00 | |
| 155_D | 166_S | 1.824 | 1.00 | |
| 136_C | 172_I | 1.824 | 1.00 | |
| 141_L | 172_I | 1.824 | 1.00 | |
| 153_H | 156_D | 1.793 | 1.00 | |
| 12_T | 16_D | 1.786 | 1.00 | |
| 67_R | 79_L | 1.777 | 1.00 | |
| 64_E | 79_L | 1.756 | 1.00 | |
| 85_A | 132_L | 1.723 | 1.00 | |
| 62_G | 65_R | 1.717 | 1.00 | |
| 10_L | 14_F | 1.71 | 1.00 | |
| 36_I | 132_L | 1.667 | 1.00 | |
| 129_A | 168_L | 1.661 | 1.00 | |
| 187_L | 191_E | 1.622 | 1.00 | |
| 39_L | 135_A | 1.612 | 1.00 | |
| 129_A | 170_I | 1.591 | 1.00 | |
| 88_A | 164_L | 1.59 | 1.00 | |
| 123_R | 126_S | 1.587 | 1.00 | |
| 37_Y | 193_C | 1.562 | 1.00 | |
| 36_I | 172_I | 1.527 | 1.00 | |
| 32_T | 174_Y | 1.521 | 1.00 | |
| 22_G | 176_D | 1.507 | 1.00 | |
| 64_E | 68_P | 1.449 | 1.00 | |
| 24_R | 176_D | 1.432 | 1.00 | |
| 23_W | 171_N | 1.422 | 1.00 | |
| 34_R | 190_E | 1.422 | 1.00 | |
| 86_I | 169_L | 1.417 | 1.00 | |
| 10_L | 13_L | 1.416 | 1.00 | |
| 56_F | 83_V | 1.415 | 1.00 | |
| 133_I | 170_I | 1.414 | 1.00 | |
| 66_L | 154_V | 1.387 | 0.99 | |
| 127_M | 130_A | 1.38 | 0.99 | |
| 69_A | 157_A | 1.366 | 0.99 | |
| 136_C | 143_T | 1.354 | 0.99 | |
| 125_S | 167_N | 1.35 | 0.99 | |
| 32_T | 35_E | 1.348 | 0.99 | |
| 145_P | 168_L | 1.334 | 0.99 | |
| 36_I | 141_L | 1.333 | 0.99 | |
| 28_V | 141_L | 1.326 | 0.99 | |
| 189_F | 193_C | 1.312 | 0.99 | |
| 60_A | 63_K | 1.294 | 0.99 | |
| 39_L | 139_L | 1.285 | 0.99 | |
| 27_P | 58_R | 1.285 | 0.99 | |
| 59_T | 62_G | 1.285 | 0.99 | |
| 87_V | 129_A | 1.28 | 0.99 | |
| 61_E | 64_E | 1.277 | 0.99 | |
| 65_R | 68_P | 1.277 | 0.99 | |
| 69_A | 153_H | 1.275 | 0.99 | |
| 133_I | 145_P | 1.267 | 0.99 | |
| 61_E | 65_R | 1.267 | 0.99 | |
| 137_R | 142_D | 1.261 | 0.99 | |
| 62_G | 157_A | 1.26 | 0.99 | |
| 34_R | 38_A | 1.255 | 0.99 | |
| 15_T | 38_A | 1.238 | 0.98 | |
| 150_D | 153_H | 1.232 | 0.98 | |
| 29_S | 174_Y | 1.213 | 0.98 | |
| 89_W | 121_A | 1.197 | 0.98 | |
| 90_D | 163_T | 1.191 | 0.98 | |
| 33_L | 83_V | 1.164 | 0.97 | |
| 152_Q | 156_D | 1.163 | 0.97 | |
| 43_G | 131_Y | 1.156 | 0.97 | |
| 19_T | 144_G | 1.153 | 0.97 | |
| 12_T | 15_T | 1.152 | 0.97 | |
| 14_F | 134_V | 1.152 | 0.97 | |
| 88_A | 160_T | 1.15 | 0.97 | |
| 53_R | 164_L | 1.131 | 0.97 | |
| 56_F | 193_C | 1.121 | 0.97 | |
| 31_E | 34_R | 1.119 | 0.96 | |
| 28_V | 32_T | 1.111 | 0.96 | |
| 126_S | 145_P | 1.097 | 0.96 | |
| 143_T | 172_I | 1.094 | 0.96 | |
| 58_R | 83_V | 1.058 | 0.95 | |
| 86_I | 166_S | 1.038 | 0.94 | |
| 28_V | 174_Y | 1.038 | 0.94 | |
| 132_L | 170_I | 1.036 | 0.94 | |
| 107_R | 111_T | 1.027 | 0.94 | |
| 130_A | 134_V | 1.025 | 0.93 | |
| 34_R | 189_F | 1.017 | 0.93 | |
| 15_T | 42_W | 1.017 | 0.93 | |
| 86_I | 158_F | 1.013 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3ge6A | 2 | 0.9796 | 100 | 0.138 | Contact Map | 0.786 |
| 3gbhA | 4 | 0.9847 | 100 | 0.144 | Contact Map | 0.847 |
| 1noxA | 1 | 0.9796 | 100 | 0.147 | Contact Map | 0.774 |
| 3bemA | 2 | 0.9898 | 100 | 0.155 | Contact Map | 0.869 |
| 1icrA | 2 | 0.9643 | 100 | 0.155 | Contact Map | 0.794 |
| 3of4A | 3 | 0.9592 | 100 | 0.155 | Contact Map | 0.816 |
| 3eofA | 2 | 0.9133 | 100 | 0.159 | Contact Map | 0.81 |
| 1zchA | 1 | 0.9286 | 100 | 0.161 | Contact Map | 0.773 |
| 3gagA | 4 | 0.949 | 100 | 0.162 | Contact Map | 0.836 |
| 2h0uA | 1 | 0.9592 | 100 | 0.163 | Contact Map | 0.752 |
Sequence Conservation (Image Generated using WebLogo v3)