| UniProt: | P0ACY1 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11134 | ||
| Length: | 183 (182) | ||
| Sequences: | 5963 | ||
| Seq/Len: | 32.76 |
| YDJA
Paralog alert: 0.81 [within 20: 0.05] - ratio of genomes with paralogs Cluster includes: NFNB RUTE YDJA |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 22_T | 25_Q | 4.362 | 1.00 | |
| 28_N | 125_Q | 3.618 | 1.00 | |
| 23_G | 51_E | 3.047 | 1.00 | |
| 47_F | 114_A | 2.814 | 1.00 | |
| 23_G | 27_Q | 2.796 | 1.00 | |
| 29_I | 122_A | 2.68 | 1.00 | |
| 19_P | 162_T | 2.599 | 1.00 | |
| 128_G | 163_P | 2.562 | 1.00 | |
| 119_Q | 129_G | 2.407 | 1.00 | |
| 9_N | 123_V | 2.392 | 1.00 | |
| 31_R | 34_M | 2.343 | 1.00 | |
| 127_F | 162_T | 2.278 | 1.00 | |
| 47_F | 90_I | 2.161 | 1.00 | |
| 48_F | 93_V | 2.143 | 1.00 | |
| 25_Q | 125_Q | 2.106 | 1.00 | |
| 33_G | 118_M | 2.053 | 1.00 | |
| 25_Q | 127_F | 2.046 | 1.00 | |
| 5_E | 9_N | 1.9 | 1.00 | |
| 93_V | 152_D | 1.867 | 1.00 | |
| 143_R | 154_I | 1.815 | 1.00 | |
| 127_F | 160_L | 1.81 | 1.00 | |
| 53_E | 56_E | 1.785 | 1.00 | |
| 46_H | 181_T | 1.767 | 1.00 | |
| 115_V | 156_G | 1.766 | 1.00 | |
| 57_R | 145_A | 1.757 | 1.00 | |
| 122_A | 160_L | 1.718 | 1.00 | |
| 32_A | 121_A | 1.709 | 1.00 | |
| 3_A | 7_L | 1.7 | 1.00 | |
| 90_I | 118_M | 1.692 | 1.00 | |
| 115_V | 158_L | 1.656 | 1.00 | |
| 17_A | 164_Q | 1.651 | 1.00 | |
| 174_P | 178_P | 1.579 | 1.00 | |
| 3_A | 6_L | 1.57 | 1.00 | |
| 15_R | 164_Q | 1.566 | 1.00 | |
| 30_L | 180_V | 1.557 | 1.00 | |
| 25_Q | 162_T | 1.529 | 1.00 | |
| 29_I | 118_M | 1.514 | 1.00 | |
| 109_M | 112_G | 1.457 | 1.00 | |
| 29_I | 160_L | 1.451 | 1.00 | |
| 113_C | 116_M | 1.425 | 1.00 | |
| 131_W | 156_G | 1.42 | 1.00 | |
| 16_L | 159_Y | 1.412 | 1.00 | |
| 54_G | 57_R | 1.399 | 0.99 | |
| 56_E | 84_F | 1.37 | 0.99 | |
| 92_V | 115_V | 1.368 | 0.99 | |
| 29_I | 127_F | 1.363 | 0.99 | |
| 119_Q | 158_L | 1.361 | 0.99 | |
| 93_V | 148_C | 1.36 | 0.99 | |
| 25_Q | 28_N | 1.35 | 0.99 | |
| 59_S | 84_F | 1.349 | 0.99 | |
| 91_T | 157_F | 1.33 | 0.99 | |
| 123_V | 128_G | 1.311 | 0.99 | |
| 119_Q | 131_W | 1.3 | 0.99 | |
| 8_I | 31_R | 1.297 | 0.99 | |
| 56_E | 60_A | 1.289 | 0.99 | |
| 91_T | 154_I | 1.28 | 0.99 | |
| 22_T | 162_T | 1.279 | 0.99 | |
| 2_D | 5_E | 1.278 | 0.99 | |
| 36_A | 117_A | 1.277 | 0.99 | |
| 176_P | 180_V | 1.276 | 0.99 | |
| 51_E | 88_L | 1.266 | 0.99 | |
| 21_P | 127_F | 1.24 | 0.98 | |
| 95_K | 151_Q | 1.24 | 0.98 | |
| 27_Q | 177_T | 1.237 | 0.98 | |
| 49_V | 88_L | 1.23 | 0.98 | |
| 122_A | 129_G | 1.227 | 0.98 | |
| 20_A | 51_E | 1.221 | 0.98 | |
| 111_A | 155_V | 1.217 | 0.98 | |
| 46_H | 152_D | 1.212 | 0.98 | |
| 32_A | 125_Q | 1.199 | 0.98 | |
| 5_E | 8_I | 1.198 | 0.98 | |
| 8_I | 35_R | 1.182 | 0.98 | |
| 27_Q | 31_R | 1.177 | 0.98 | |
| 4_L | 28_N | 1.176 | 0.98 | |
| 96_C | 153_K | 1.175 | 0.98 | |
| 47_F | 92_V | 1.168 | 0.97 | |
| 61_V | 145_A | 1.159 | 0.97 | |
| 88_L | 160_L | 1.149 | 0.97 | |
| 26_L | 88_L | 1.147 | 0.97 | |
| 121_A | 124_A | 1.141 | 0.97 | |
| 12_S | 130_I | 1.139 | 0.97 | |
| 58_F | 142_V | 1.13 | 0.97 | |
| 7_L | 120_M | 1.127 | 0.97 | |
| 90_I | 160_L | 1.126 | 0.97 | |
| 38_D | 45_W | 1.097 | 0.96 | |
| 121_A | 125_Q | 1.092 | 0.96 | |
| 17_A | 162_T | 1.075 | 0.95 | |
| 92_V | 118_M | 1.068 | 0.95 | |
| 57_R | 60_A | 1.067 | 0.95 | |
| 116_M | 120_M | 1.053 | 0.95 | |
| 94_A | 107_Q | 1.046 | 0.94 | |
| 49_V | 180_V | 1.04 | 0.94 | |
| 21_P | 25_Q | 1.04 | 0.94 | |
| 6_L | 124_A | 1.037 | 0.94 | |
| 94_A | 111_A | 1.029 | 0.94 | |
| 109_M | 133_S | 1.027 | 0.94 | |
| 129_G | 160_L | 1.019 | 0.93 | |
| 112_G | 131_W | 1.018 | 0.93 | |
| 141_V | 144_E | 1.008 | 0.93 | |
| 92_V | 111_A | 1.004 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3bm1A | 2 | 1 | 100 | 0.104 | Contact Map | 0.771 |
| 3k6hA | 2 | 0.9945 | 100 | 0.119 | Contact Map | 0.718 |
| 3bemA | 2 | 0.9016 | 100 | 0.124 | Contact Map | 0.847 |
| 1icrA | 2 | 0.929 | 100 | 0.126 | Contact Map | 0.801 |
| 3of4A | 3 | 0.9016 | 100 | 0.129 | Contact Map | 0.802 |
| 2b67A | 4 | 0.9016 | 100 | 0.131 | Contact Map | 0.845 |
| 1bkjA | 2 | 0.9126 | 100 | 0.133 | Contact Map | 0.763 |
| 3gagA | 4 | 0.8962 | 100 | 0.134 | Contact Map | 0.844 |
| 1zchA | 1 | 0.9126 | 100 | 0.135 | Contact Map | 0.753 |
| 2i7hA | 6 | 0.9836 | 100 | 0.135 | Contact Map | 0.871 |
Sequence Conservation (Image Generated using WebLogo v3)