| UniProt: | P69808 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG14155 | ||
| Length: | 108 (104) | ||
| Sequences: | 935 | ||
| Seq/Len: | 8.99 |
| PTFB1
Paralog alert: 0.61 [within 20: 0.18] - ratio of genomes with paralogs Cluster includes: PTFB1 PTFB2 PTFB3 |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 37_K | 54_D | 3.365 | 1.00 | |
| 53_Q | 57_E | 3.364 | 1.00 | |
| 6_I | 61_I | 3.183 | 1.00 | |
| 32_A | 97_K | 2.955 | 1.00 | |
| 52_A | 56_A | 2.902 | 1.00 | |
| 25_L | 36_V | 2.615 | 1.00 | |
| 32_A | 93_A | 2.595 | 1.00 | |
| 7_A | 38_I | 2.55 | 1.00 | |
| 46_I | 49_R | 2.398 | 1.00 | |
| 91_N | 94_G | 2.376 | 1.00 | |
| 93_A | 97_K | 2.334 | 1.00 | |
| 31_E | 93_A | 2.249 | 1.00 | |
| 60_I | 99_I | 2.224 | 1.00 | |
| 29_A | 36_V | 2.166 | 1.00 | |
| 87_D | 91_N | 2.137 | 1.00 | |
| 70_E | 73_E | 2.043 | 1.00 | |
| 4_K | 57_E | 1.95 | 1.00 | |
| 4_K | 35_E | 1.929 | 1.00 | |
| 26_E | 30_V | 1.86 | 1.00 | |
| 22_A | 26_E | 1.823 | 1.00 | |
| 28_A | 32_A | 1.792 | 1.00 | |
| 50_L | 55_I | 1.769 | 1.00 | |
| 28_A | 31_E | 1.762 | 1.00 | |
| 37_K | 48_N | 1.737 | 1.00 | |
| 40_T | 48_N | 1.418 | 0.99 | |
| 72_N | 82_E | 1.393 | 0.99 | |
| 97_K | 101_E | 1.387 | 0.99 | |
| 34_Y | 96_I | 1.334 | 0.99 | |
| 23_Q | 26_E | 1.33 | 0.99 | |
| 8_L | 41_Q | 1.327 | 0.99 | |
| 4_K | 59_T | 1.254 | 0.98 | |
| 85_L | 88_A | 1.254 | 0.98 | |
| 86_Q | 90_K | 1.252 | 0.98 | |
| 27_E | 30_V | 1.226 | 0.98 | |
| 10_A | 67_V | 1.22 | 0.98 | |
| 51_T | 54_D | 1.208 | 0.98 | |
| 61_I | 78_R | 1.199 | 0.97 | |
| 10_A | 41_Q | 1.18 | 0.97 | |
| 19_F | 47_Q | 1.134 | 0.96 | |
| 49_R | 71_D | 1.107 | 0.95 | |
| 28_A | 92_A | 1.086 | 0.95 | |
| 28_A | 93_A | 1.06 | 0.94 | |
| 44_D | 47_Q | 1.059 | 0.94 | |
| 22_A | 48_N | 1.043 | 0.93 | |
| 19_F | 85_L | 1.033 | 0.93 | |
| 81_Y | 95_I | 1.032 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2r48A | 1 | 0.9722 | 100 | 0.154 | Contact Map | 0.828 |
| 2kyrA | 1 | 1 | 100 | 0.295 | Contact Map | 0.666 |
| 2r4qA | 1 | 0.9722 | 100 | 0.327 | Contact Map | 0.781 |
| 2m1zA | 1 | 0.9815 | 100 | 0.339 | Contact Map | 0.622 |
| 4mgeA | 2 | 0.8981 | 99.7 | 0.59 | Contact Map | 0.543 |
| 1e2bA | 1 | 0.9259 | 99.7 | 0.606 | Contact Map | 0.48 |
| 2l2qA | 1 | 0.9074 | 99.6 | 0.641 | Contact Map | 0.352 |
| 3czcA | 1 | 0.8519 | 98.8 | 0.747 | Contact Map | 0.388 |
| 1tvmA | 1 | 0.8704 | 98.6 | 0.761 | Contact Map | 0.246 |
| 1vkrA | 1 | 0.8796 | 98.1 | 0.795 | Contact Map | 0.437 |
Sequence Conservation (Image Generated using WebLogo v3)