| UniProt: | P31825 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11538 | ||
| Length: | 245 (230) | ||
| Sequences: | 2560 | ||
| Seq/Len: | 11.13 |
| TRMN6
Paralog alert: 0.57 [within 20: 0.00] - ratio of genomes with paralogs Cluster includes: PRMB PRMC TRMN6 |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 49_L | 116_F | 3.17 | 1.00 | |
| 59_A | 74_A | 3.134 | 1.00 | |
| 19_F | 87_E | 2.932 | 1.00 | |
| 155_A | 165_F | 2.826 | 1.00 | |
| 117_D | 160_T | 2.733 | 1.00 | |
| 53_A | 85_A | 2.637 | 1.00 | |
| 53_A | 59_A | 2.575 | 1.00 | |
| 89_I | 100_V | 2.545 | 1.00 | |
| 103_A | 108_W | 2.539 | 1.00 | |
| 62_L | 120_I | 2.527 | 1.00 | |
| 152_L | 181_A | 2.501 | 1.00 | |
| 73_D | 116_F | 2.495 | 1.00 | |
| 79_S | 102_T | 2.435 | 1.00 | |
| 73_D | 101_H | 2.411 | 1.00 | |
| 59_A | 72_I | 2.363 | 1.00 | |
| 82_A | 100_V | 2.298 | 1.00 | |
| 10_R | 17_Q | 2.226 | 1.00 | |
| 30_G | 33_G | 2.141 | 1.00 | |
| 74_A | 100_V | 2.063 | 1.00 | |
| 76_E | 82_A | 2.02 | 1.00 | |
| 18_F | 61_M | 1.996 | 1.00 | |
| 195_A | 203_H | 1.984 | 1.00 | |
| 50_D | 59_A | 1.953 | 1.00 | |
| 16_K | 61_M | 1.919 | 1.00 | |
| 89_I | 98_I | 1.9 | 1.00 | |
| 63_A | 72_I | 1.891 | 1.00 | |
| 21_A | 84_Q | 1.829 | 1.00 | |
| 159_I | 163_G | 1.765 | 1.00 | |
| 16_K | 64_Q | 1.745 | 1.00 | |
| 53_A | 76_E | 1.738 | 1.00 | |
| 23_D | 80_E | 1.729 | 1.00 | |
| 12_G | 17_Q | 1.721 | 1.00 | |
| 14_T | 65_R | 1.707 | 1.00 | |
| 60_L | 94_W | 1.702 | 1.00 | |
| 128_Q | 140_A | 1.696 | 1.00 | |
| 24_R | 55_S | 1.678 | 1.00 | |
| 225_G | 232_E | 1.627 | 1.00 | |
| 167_V | 181_A | 1.619 | 1.00 | |
| 148_H | 167_V | 1.575 | 1.00 | |
| 19_F | 91_Q | 1.562 | 1.00 | |
| 148_H | 169_L | 1.555 | 1.00 | |
| 136_Q | 140_A | 1.553 | 1.00 | |
| 118_L | 166_C | 1.539 | 1.00 | |
| 104_D | 150_S | 1.534 | 1.00 | |
| 181_A | 209_F | 1.53 | 1.00 | |
| 144_T | 149_P | 1.522 | 1.00 | |
| 12_G | 15_F | 1.513 | 1.00 | |
| 71_M | 99_N | 1.506 | 1.00 | |
| 37_G | 194_V | 1.488 | 1.00 | |
| 106_Q | 158_C | 1.471 | 1.00 | |
| 186_W | 209_F | 1.465 | 1.00 | |
| 47_R | 71_M | 1.461 | 1.00 | |
| 18_F | 60_L | 1.45 | 1.00 | |
| 82_A | 102_T | 1.446 | 1.00 | |
| 16_K | 65_R | 1.438 | 1.00 | |
| 169_L | 206_L | 1.394 | 0.99 | |
| 143_T | 149_P | 1.384 | 0.99 | |
| 225_G | 229_N | 1.376 | 0.99 | |
| 77_L | 137_R | 1.373 | 0.99 | |
| 104_D | 107_Q | 1.363 | 0.99 | |
| 152_L | 180_L | 1.35 | 0.99 | |
| 105_I | 150_S | 1.341 | 0.99 | |
| 179_E | 183_S | 1.318 | 0.99 | |
| 82_A | 86_Q | 1.304 | 0.99 | |
| 14_T | 36_L | 1.296 | 0.99 | |
| 51_I | 105_I | 1.288 | 0.99 | |
| 63_A | 97_R | 1.28 | 0.99 | |
| 35_L | 58_L | 1.28 | 0.99 | |
| 232_E | 236_A | 1.278 | 0.99 | |
| 221_L | 233_A | 1.272 | 0.99 | |
| 142_Y | 147_D | 1.266 | 0.99 | |
| 151_L | 165_F | 1.265 | 0.99 | |
| 154_C | 157_E | 1.262 | 0.99 | |
| 83_A | 86_Q | 1.257 | 0.99 | |
| 38_A | 166_C | 1.254 | 0.99 | |
| 198_E | 202_P | 1.243 | 0.98 | |
| 149_P | 180_L | 1.237 | 0.98 | |
| 57_L | 61_M | 1.231 | 0.98 | |
| 47_R | 116_F | 1.23 | 0.98 | |
| 52_G | 121_S | 1.184 | 0.98 | |
| 171_E | 202_P | 1.181 | 0.98 | |
| 23_D | 84_Q | 1.18 | 0.98 | |
| 34_I | 166_C | 1.169 | 0.97 | |
| 169_L | 174_G | 1.162 | 0.97 | |
| 14_T | 61_M | 1.16 | 0.97 | |
| 174_G | 193_D | 1.16 | 0.97 | |
| 18_F | 57_L | 1.15 | 0.97 | |
| 137_R | 140_A | 1.15 | 0.97 | |
| 85_A | 100_V | 1.146 | 0.97 | |
| 74_A | 98_I | 1.132 | 0.97 | |
| 135_P | 138_E | 1.123 | 0.97 | |
| 79_S | 83_A | 1.119 | 0.96 | |
| 174_G | 203_H | 1.118 | 0.96 | |
| 38_A | 118_L | 1.115 | 0.96 | |
| 169_L | 177_F | 1.106 | 0.96 | |
| 170_P | 173_I | 1.095 | 0.96 | |
| 48_C | 69_S | 1.085 | 0.96 | |
| 73_D | 99_N | 1.083 | 0.96 | |
| 127_Q | 172_Q | 1.078 | 0.95 | |
| 166_C | 207_L | 1.078 | 0.95 | |
| 190_L | 208_A | 1.075 | 0.95 | |
| 190_L | 218_S | 1.075 | 0.95 | |
| 59_A | 98_I | 1.074 | 0.95 | |
| 21_A | 87_E | 1.068 | 0.95 | |
| 48_C | 66_T | 1.064 | 0.95 | |
| 167_V | 177_F | 1.061 | 0.95 | |
| 141_R | 147_D | 1.058 | 0.95 | |
| 41_P | 164_F | 1.058 | 0.95 | |
| 52_G | 105_I | 1.057 | 0.95 | |
| 26_A | 84_Q | 1.055 | 0.95 | |
| 159_I | 165_F | 1.054 | 0.95 | |
| 72_I | 98_I | 1.054 | 0.95 | |
| 201_L | 216_C | 1.046 | 0.94 | |
| 121_S | 167_V | 1.045 | 0.94 | |
| 51_I | 151_L | 1.038 | 0.94 | |
| 66_T | 69_S | 1.036 | 0.94 | |
| 50_D | 53_A | 1.029 | 0.94 | |
| 90_N | 95_A | 1.024 | 0.93 | |
| 178_T | 193_D | 1.023 | 0.93 | |
| 116_F | 119_I | 1.018 | 0.93 | |
| 18_F | 94_W | 1.017 | 0.93 | |
| 63_A | 98_I | 1.014 | 0.93 | |
| 49_L | 119_I | 1.013 | 0.93 | |
| 60_L | 92_S | 1.011 | 0.93 | |
| 192_T | 221_L | 1.007 | 0.93 | |
| 78_E | 81_A | 1.007 | 0.93 | |
| 195_A | 220_R | 1.007 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3lpmA | 2 | 0.9918 | 100 | 0.396 | Contact Map | 0.672 |
| 2ozvA | 2 | 0.9592 | 100 | 0.432 | Contact Map | 0.666 |
| 2b3tA | 1 | 0.8286 | 100 | 0.486 | Contact Map | 0.805 |
| 1nv8A | 2 | 0.8041 | 100 | 0.499 | Contact Map | 0.79 |
| 3evzA | 1 | 0.8612 | 100 | 0.576 | Contact Map | 0.713 |
| 4dzrA | 1 | 0.8041 | 100 | 0.581 | Contact Map | 0.548 |
| 2qfmA | 4 | 0.8204 | 99.9 | 0.631 | Contact Map | 0.528 |
| 2h00A | 3 | 0.8449 | 99.9 | 0.651 | Contact Map | 0.581 |
| 1uwvA | 1 | 0.7673 | 99.9 | 0.651 | Contact Map | 0.627 |
| 2ih2A | 2 | 0.9102 | 99.9 | 0.655 | Contact Map | 0.641 |
Sequence Conservation (Image Generated using WebLogo v3)