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OPENSEQ.org
HOKD - Protein HokD
UniProt: P0ACG6 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG11130
Length: 51 (51)
Sequences: 92
Seq/Len: 1.80
HOKD
Paralog alert: 0.60 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: HOKA HOKB HOKC HOKD HOKE MOKC
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
32_V 45_T 2.325 1.00
25_T 41_V 1.986 0.99
31_E 40_E 1.774 0.97
11_L 23_L 1.546 0.91
7_M 41_V 1.516 0.90
28_D 32_V 1.425 0.86
7_M 34_I 1.404 0.85
31_E 46_A 1.303 0.78
33_R 43_V 1.251 0.74
8_L 37_G 1.222 0.72
4_Q 47_Y 1.222 0.72
47_Y 51_E 1.21 0.71
21_T 35_R 1.2 0.70
13_V 24_V 1.192 0.69
16_L 22_A 1.167 0.67
25_T 33_R 1.162 0.66
20_V 50_E 1.144 0.64
35_R 40_E 1.14 0.64
21_T 43_V 1.139 0.64
21_T 29_L 1.124 0.62
18_V 30_C 1.095 0.59
21_T 32_V 1.076 0.57
4_Q 9_I 1.073 0.57
34_I 42_A 1.041 0.54
9_I 18_V 1.017 0.51
21_T 28_D 1.013 0.51
28_D 48_E 1.002 0.49
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
3b55A10.80393.30.903Contact Map0
4ixqO20.72552.30.911Contact Map1
3dxiA20.52942.20.911Contact Map0.033
4jn6A20.60782.10.912Contact Map0
1z1nX10.9022.10.912Contact Map0
2ztjA10.54920.914Contact Map0.048
4kytB20.50981.90.914Contact Map0
4c91A20.9021.90.915Contact Map0.041
3w5aC10.58821.80.916Contact Map0
4hq1A10.76471.70.917Contact Map1
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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