| UniProt: | P0ABP8 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG10222 | ||
| Length: | 239 (232) | ||
| Sequences: | 2275 | ||
| Seq/Len: | 9.81 |
| DEOD
Paralog alert: 0.72 [within 20: 0.03] - ratio of genomes with paralogs Cluster includes: DEOD MTNN UDP |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 190_A | 197_A | 3.509 | 1.00 | |
| 92_C | 203_V | 3.212 | 1.00 | |
| 131_D | 196_K | 3.139 | 1.00 | |
| 78_I | 195_A | 3.131 | 1.00 | |
| 85_K | 196_K | 2.79 | 1.00 | |
| 36_D | 52_T | 2.651 | 1.00 | |
| 108_M | 151_V | 2.409 | 1.00 | |
| 109_G | 129_I | 2.398 | 1.00 | |
| 27_K | 31_E | 2.311 | 1.00 | |
| 99_V | 150_R | 2.304 | 1.00 | |
| 183_A | 199_T | 2.265 | 1.00 | |
| 139_V | 151_V | 2.252 | 1.00 | |
| 139_V | 143_K | 2.176 | 1.00 | |
| 134_M | 198_L | 2.165 | 1.00 | |
| 107_G | 154_L | 2.088 | 1.00 | |
| 136_R | 140_D | 2.08 | 1.00 | |
| 15_D | 84_K | 2.066 | 1.00 | |
| 9_E | 12_D | 1.989 | 1.00 | |
| 52_T | 57_K | 1.984 | 1.00 | |
| 75_K | 193_F | 1.925 | 1.00 | |
| 155_F | 176_I | 1.903 | 1.00 | |
| 169_D | 173_K | 1.889 | 1.00 | |
| 42_N | 47_L | 1.888 | 1.00 | |
| 135_V | 198_L | 1.885 | 1.00 | |
| 96_L | 177_L | 1.842 | 1.00 | |
| 38_R | 50_T | 1.82 | 1.00 | |
| 106_I | 135_V | 1.819 | 1.00 | |
| 105_V | 178_G | 1.818 | 1.00 | |
| 109_G | 153_N | 1.801 | 1.00 | |
| 84_K | 195_A | 1.792 | 1.00 | |
| 138_A | 198_L | 1.749 | 1.00 | |
| 39_E | 42_N | 1.743 | 1.00 | |
| 12_D | 38_R | 1.726 | 1.00 | |
| 19_M | 86_I | 1.707 | 1.00 | |
| 23_P | 62_G | 1.699 | 1.00 | |
| 67_I | 156_S | 1.671 | 1.00 | |
| 67_I | 185_G | 1.659 | 1.00 | |
| 132_F | 136_R | 1.611 | 1.00 | |
| 92_C | 178_G | 1.575 | 1.00 | |
| 100_K | 103_D | 1.527 | 1.00 | |
| 74_T | 86_I | 1.527 | 1.00 | |
| 19_M | 63_H | 1.503 | 1.00 | |
| 140_D | 143_K | 1.483 | 1.00 | |
| 16_V | 85_K | 1.481 | 1.00 | |
| 166_E | 169_D | 1.475 | 1.00 | |
| 54_K | 231_E | 1.472 | 1.00 | |
| 135_V | 151_V | 1.469 | 1.00 | |
| 154_L | 178_G | 1.464 | 1.00 | |
| 214_T | 217_E | 1.461 | 1.00 | |
| 109_G | 127_A | 1.441 | 1.00 | |
| 180_E | 183_A | 1.429 | 1.00 | |
| 75_K | 79_T | 1.404 | 0.99 | |
| 79_T | 193_F | 1.397 | 0.99 | |
| 136_R | 139_V | 1.393 | 0.99 | |
| 106_I | 149_A | 1.377 | 0.99 | |
| 21_G | 25_R | 1.377 | 0.99 | |
| 223_N | 226_I | 1.373 | 0.99 | |
| 106_I | 139_V | 1.34 | 0.99 | |
| 105_V | 203_V | 1.31 | 0.99 | |
| 113_D | 157_A | 1.302 | 0.99 | |
| 40_V | 61_M | 1.299 | 0.99 | |
| 86_I | 190_A | 1.275 | 0.99 | |
| 136_R | 143_K | 1.269 | 0.99 | |
| 29_I | 60_V | 1.269 | 0.99 | |
| 112_T | 188_G | 1.25 | 0.98 | |
| 133_D | 196_K | 1.249 | 0.98 | |
| 224_D | 227_K | 1.234 | 0.98 | |
| 112_T | 184_A | 1.232 | 0.98 | |
| 40_V | 50_T | 1.231 | 0.98 | |
| 70_C | 185_G | 1.23 | 0.98 | |
| 86_I | 195_A | 1.225 | 0.98 | |
| 110_A | 187_Y | 1.225 | 0.98 | |
| 180_E | 199_T | 1.216 | 0.98 | |
| 96_L | 99_V | 1.203 | 0.98 | |
| 156_S | 183_A | 1.19 | 0.98 | |
| 150_R | 177_L | 1.189 | 0.98 | |
| 17_V | 83_V | 1.179 | 0.98 | |
| 78_I | 86_I | 1.173 | 0.97 | |
| 105_V | 177_L | 1.169 | 0.97 | |
| 50_T | 59_S | 1.167 | 0.97 | |
| 110_A | 183_A | 1.164 | 0.97 | |
| 206_H | 209_T | 1.155 | 0.97 | |
| 39_E | 47_L | 1.154 | 0.97 | |
| 23_P | 30_A | 1.143 | 0.97 | |
| 98_H | 150_R | 1.134 | 0.97 | |
| 74_T | 189_V | 1.132 | 0.97 | |
| 46_M | 62_G | 1.116 | 0.96 | |
| 28_Y | 223_N | 1.115 | 0.96 | |
| 88_R | 186_I | 1.113 | 0.96 | |
| 223_N | 227_K | 1.105 | 0.96 | |
| 132_F | 139_V | 1.097 | 0.96 | |
| 35_E | 52_T | 1.094 | 0.96 | |
| 111_C | 127_A | 1.091 | 0.96 | |
| 52_T | 55_G | 1.087 | 0.95 | |
| 111_C | 155_F | 1.083 | 0.95 | |
| 143_K | 148_D | 1.074 | 0.95 | |
| 94_A | 206_H | 1.066 | 0.95 | |
| 103_D | 150_R | 1.062 | 0.95 | |
| 16_V | 233_V | 1.059 | 0.95 | |
| 107_G | 130_A | 1.055 | 0.94 | |
| 48_G | 59_S | 1.053 | 0.94 | |
| 169_D | 172_E | 1.045 | 0.94 | |
| 115_K | 120_R | 1.045 | 0.94 | |
| 137_N | 141_A | 1.04 | 0.94 | |
| 61_M | 73_Y | 1.031 | 0.94 | |
| 95_V | 179_V | 1.029 | 0.93 | |
| 170_V | 173_K | 1.028 | 0.93 | |
| 104_V | 228_I | 1.028 | 0.93 | |
| 16_V | 56_R | 1.025 | 0.93 | |
| 50_T | 57_K | 1.024 | 0.93 | |
| 187_Y | 197_A | 1.019 | 0.93 | |
| 85_K | 131_D | 1.019 | 0.93 | |
| 71_S | 189_V | 1.014 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 4m3nA | 3 | 0.9749 | 100 | 0.202 | Contact Map | 0.866 |
| 3bjeA | 2 | 0.9833 | 100 | 0.205 | Contact Map | 0.737 |
| 4ldnA | 1 | 1 | 100 | 0.208 | Contact Map | 0.749 |
| 4lkrA | 1 | 0.9833 | 100 | 0.211 | Contact Map | 0.827 |
| 4m7wA | 3 | 0.9874 | 100 | 0.215 | Contact Map | 0.876 |
| 1odkA | 6 | 0.9833 | 100 | 0.216 | Contact Map | 0.84 |
| 1vhwA | 6 | 1 | 100 | 0.221 | Contact Map | 0.831 |
| 3u40A | 6 | 0.9749 | 100 | 0.226 | Contact Map | 0.862 |
| 3phcA | 6 | 0.9874 | 100 | 0.234 | Contact Map | 0.791 |
| 3uawA | 1 | 0.9833 | 100 | 0.237 | Contact Map | 0.845 |
Sequence Conservation (Image Generated using WebLogo v3)