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OPENSEQ.org

PTPB1 - PTPD
UniProt: P42909 - P42911
Length: 421
Sequences: 680
Seq/Len: 1.65
I_Prob: 0.01

PTPB1 - N-acetylgalactosamine-specific phosphotransferase enzyme IIB component 1
Paralog alert: 0.84 [within 20: 0.20] - ratio of genomes with paralogs
Cluster includes: PTPB1 PTPB2
PTPD - N-acetylgalactosamine permease IID component
Paralog alert: 0.75 [within 20: 0.16] - ratio of genomes with paralogs
Cluster includes: PTND PTPD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
96_V 114_L 1.18 0.01
45_I 5_I 1.18 0.01
84_L 43_K 1.15 0.01
105_V 42_L 1.12 0.00
86_C 72_G 1.11 0.00
84_L 253_L 1.11 0.00
114_E 55_A 1.09 0.00
22_V 97_A 1.01 0.00
96_V 227_A 0.97 0.00
21_G 110_F 0.97 0.00
67_E 38_M 0.96 0.00
101_D 256_V 0.93 0.00
43_D 94_L 0.91 0.00
157_P 121_I 0.91 0.00
35_V 97_A 0.91 0.00
22_V 188_L 0.90 0.00
20_V 102_I 0.89 0.00
134_R 252_V 0.89 0.00
42_N 216_F 0.88 0.00
44_D 164_D 0.87 0.00
45_I 160_V 0.87 0.00
153_K 230_L 0.87 0.00
67_E 173_I 0.87 0.00
67_E 132_L 0.87 0.00
94_K 214_D 0.86 0.00
147_D 29_M 0.86 0.00
81_K 8_K 0.86 0.00
127_D 198_V 0.85 0.00
76_A 115_L 0.84 0.00
20_V 29_M 0.84 0.00
53_T 198_V 0.83 0.00
107_V 233_Y 0.82 0.00
149_P 193_V 0.81 0.00
127_D 48_D 0.81 0.00
122_K 185_I 0.80 0.00
85_I 108_A 0.80 0.00
67_E 196_N 0.80 0.00
85_I 179_I 0.79 0.00
86_C 130_N 0.79 0.00
21_G 117_I 0.78 0.00
82_I 77_L 0.78 0.00
154_E 131_L 0.78 0.00
44_D 217_D 0.78 0.00
105_V 77_L 0.77 0.00
56_T 121_I 0.77 0.00
44_D 136_L 0.77 0.00
155_Q 252_V 0.77 0.00
128_Q 135_I 0.77 0.00
11_I 128_Q 0.77 0.00
67_E 164_D 0.77 0.00
84_L 53_L 0.76 0.00
129_D 20_L 0.76 0.00
119_I 223_I 0.76 0.00
127_D 146_F 0.75 0.00
21_G 29_M 0.75 0.00
26_S 174_A 0.75 0.00
90_Q 230_L 0.74 0.00
44_D 55_A 0.74 0.00
150_G 139_A 0.73 0.00
16_V 31_A 0.73 0.00
115_G 33_G 0.73 0.00
26_S 70_L 0.73 0.00
124_Y 97_A 0.73 0.00
109_N 103_A 0.72 0.00
104_D 139_A 0.72 0.00
59_F 157_S 0.72 0.00
136_I 170_S 0.72 0.00
37_D 34_F 0.72 0.00
70_I 252_V 0.71 0.00
131_T 128_Q 0.71 0.00
142_N 231_L 0.71 0.00
93_R 21_Q 0.71 0.00
116_K 170_S 0.70 0.00
35_V 32_G 0.70 0.00
103_K 133_G 0.70 0.00
96_V 231_L 0.70 0.00
55_E 64_I 0.70 0.00
85_I 200_S 0.69 0.00
131_T 206_T 0.69 0.00
140_G 41_I 0.69 0.00
125_V 137_F 0.69 0.00
86_C 187_G 0.68 0.00
90_Q 26_Y 0.68 0.00
105_V 253_L 0.68 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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