May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

DBPA - TPX
UniProt: P21693 - P0A862
Length: 625
Sequences: 456
Seq/Len: 0.84
I_Prob: 0.00

DBPA - ATP-independent RNA helicase DbpA
Paralog alert: 0.87 [within 20: 0.08] - ratio of genomes with paralogs
Cluster includes: DBPA DEAD RHLB RHLE SRMB
TPX - Thiol peroxidase
Paralog alert: 0.86 [within 20: 0.09] - ratio of genomes with paralogs
Cluster includes: AHPC BCP DSBE TPX
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
314_V 120_V 1.08 0.00
314_V 140_E 0.94 0.00
41_K 139_D 0.93 0.00
236_L 80_V 0.88 0.00
338_S 163_L 0.86 0.00
151_V 81_L 0.81 0.00
342_I 59_G 0.80 0.00
136_H 74_E 0.79 0.00
33_A 32_A 0.78 0.00
296_V 163_L 0.78 0.00
286_R 118_Y 0.78 0.00
12_P 160_E 0.77 0.00
215_P 139_D 0.77 0.00
126_I 49_V 0.76 0.00
364_L 137_V 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.4193 seconds.