May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

SRMB - TRML
UniProt: P21507 - P0AGJ7
Length: 601
Sequences: 338
Seq/Len: 0.64
I_Prob: 0.00

SRMB - ATP-dependent RNA helicase SrmB
Paralog alert: 0.86 [within 20: 0.09] - ratio of genomes with paralogs
Cluster includes: DBPA DEAD RHLB RHLE SRMB
TRML - tRNA (cytidine(34)-2'-O)-methyltransferase
Paralog alert: 0.90 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: RLMB TRML
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
151_V 139_V 1.08 0.00
155_I 26_G 1.02 0.00
151_V 57_V 1.00 0.00
46_G 21_L 0.99 0.00
253_V 113_A 0.95 0.00
155_I 125_V 0.95 0.00
274_N 27_F 0.92 0.00
34_A 2_L 0.91 0.00
298_R 140_V 0.91 0.00
23_G 67_L 0.90 0.00
79_I 97_L 0.87 0.00
264_L 59_R 0.87 0.00
81_I 32_I 0.86 0.00
45_L 139_V 0.86 0.00
321_F 7_Y 0.85 0.00
349_I 97_L 0.85 0.00
239_L 120_I 0.84 0.00
30_I 63_Y 0.84 0.00
131_V 120_I 0.83 0.00
130_V 82_G 0.80 0.00
60_L 48_G 0.80 0.00
277_Y 15_T 0.80 0.00
48_A 76_F 0.79 0.00
140_Y 84_P 0.79 0.00
81_I 108_A 0.78 0.00
206_D 108_A 0.78 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0494 seconds.