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OPENSEQ.org

ISCR - NIFU
UniProt: P0AGK8 - P0ACD4
Length: 290
Sequences: 345
Seq/Len: 1.29
I_Prob: 0.06

ISCR - HTH-type transcriptional regulator IscR
Paralog alert: 0.58 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: ISCR NSRR
NIFU - NifU-like protein
Paralog alert: 0.07 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: NIFU
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
36_G 49_D 1.47 0.06
96_G 51_G 1.28 0.03
2_R 116_A 1.18 0.03
82_A 56_A 1.11 0.02
52_N 84_E 1.08 0.02
90_T 72_L 1.03 0.02
21_S 118_I 1.01 0.01
46_F 69_S 0.95 0.01
73_S 49_D 0.94 0.01
22_E 89_K 0.94 0.01
71_A 5_E 0.93 0.01
14_M 46_K 0.92 0.01
38_S 53_I 0.92 0.01
79_V 77_V 0.92 0.01
14_M 91_T 0.91 0.01
70_D 49_D 0.90 0.01
125_T 87_A 0.89 0.01
67_L 77_V 0.88 0.01
128_E 28_G 0.87 0.01
9_Y 108_I 0.86 0.01
69_K 49_D 0.86 0.01
53_G 84_E 0.86 0.01
35_Q 116_A 0.86 0.01
50_R 83_D 0.86 0.01
17_V 86_Q 0.84 0.01
113_L 98_E 0.84 0.01
132_N 77_V 0.82 0.01
118_T 73_V 0.82 0.01
55_V 44_Q 0.82 0.01
91_R 89_K 0.82 0.01
69_K 22_N 0.82 0.01
110_W 58_F 0.81 0.01
51_K 10_H 0.81 0.01
3_L 113_A 0.81 0.01
57_S 110_A 0.80 0.01
31_I 13_N 0.80 0.01
114_S 116_A 0.80 0.01
117_L 24_D 0.79 0.01
15_L 108_I 0.79 0.01
8_R 111_E 0.79 0.01
12_T 31_M 0.78 0.01
32_S 89_K 0.78 0.01
17_V 108_I 0.78 0.01
51_K 124_K 0.78 0.01
14_M 54_E 0.77 0.01
46_F 65_S 0.77 0.01
78_E 8_I 0.77 0.01
52_N 8_I 0.77 0.01
77_G 47_V 0.76 0.01
122_N 45_I 0.76 0.01
2_R 15_R 0.76 0.01
91_R 73_V 0.76 0.01
103_K 42_K 0.75 0.01
42_L 11_Y 0.75 0.01
114_S 31_M 0.75 0.01
83_V 56_A 0.74 0.01
13_A 12_E 0.74 0.01
125_T 124_K 0.74 0.01
90_T 53_I 0.74 0.01
4_T 23_N 0.74 0.01
27_P 24_D 0.73 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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