| UniProt: | P0ACD4 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13395 | ||
| Length: | 128 (125) | ||
| Sequences: | 1543 | ||
| Seq/Len: | 12.34 |
| NIFU
Paralog alert: 0.07 [within 20: 0.00] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 48_N | 54_E | 4.312 | 1.00 | |
| 15_R | 75_E | 3.266 | 1.00 | |
| 20_F | 57_R | 3.024 | 1.00 | |
| 16_N | 78_K | 2.876 | 1.00 | |
| 24_D | 46_K | 2.589 | 1.00 | |
| 81_S | 84_E | 2.4 | 1.00 | |
| 55_D | 78_K | 2.162 | 1.00 | |
| 9_D | 15_R | 2.132 | 1.00 | |
| 19_S | 59_K | 2.094 | 1.00 | |
| 16_N | 74_T | 2.028 | 1.00 | |
| 80_K | 84_E | 2.001 | 1.00 | |
| 46_K | 54_E | 1.941 | 1.00 | |
| 53_I | 85_A | 1.9 | 1.00 | |
| 10_H | 15_R | 1.878 | 1.00 | |
| 46_K | 55_D | 1.773 | 1.00 | |
| 22_N | 46_K | 1.756 | 1.00 | |
| 52_I | 81_S | 1.754 | 1.00 | |
| 44_Q | 57_R | 1.675 | 1.00 | |
| 82_L | 118_I | 1.599 | 1.00 | |
| 31_M | 42_K | 1.594 | 1.00 | |
| 18_G | 57_R | 1.55 | 1.00 | |
| 10_H | 71_S | 1.512 | 1.00 | |
| 19_S | 44_Q | 1.466 | 1.00 | |
| 123_S | 126_E | 1.443 | 1.00 | |
| 32_V | 113_A | 1.439 | 1.00 | |
| 72_L | 96_E | 1.427 | 1.00 | |
| 19_S | 42_K | 1.422 | 1.00 | |
| 119_A | 123_S | 1.409 | 1.00 | |
| 47_V | 82_L | 1.39 | 0.99 | |
| 58_F | 74_T | 1.388 | 0.99 | |
| 70_S | 110_A | 1.376 | 0.99 | |
| 29_S | 44_Q | 1.372 | 0.99 | |
| 56_A | 77_V | 1.368 | 0.99 | |
| 77_V | 114_I | 1.34 | 0.99 | |
| 28_G | 45_I | 1.339 | 0.99 | |
| 39_D | 106_C | 1.321 | 0.99 | |
| 71_S | 74_T | 1.313 | 0.99 | |
| 72_L | 76_W | 1.288 | 0.99 | |
| 122_K | 126_E | 1.279 | 0.99 | |
| 83_D | 86_Q | 1.261 | 0.99 | |
| 94_A | 104_I | 1.257 | 0.99 | |
| 122_K | 125_R | 1.242 | 0.98 | |
| 14_P | 71_S | 1.207 | 0.98 | |
| 10_H | 14_P | 1.153 | 0.97 | |
| 86_Q | 118_I | 1.142 | 0.97 | |
| 20_F | 44_Q | 1.132 | 0.97 | |
| 7_V | 65_S | 1.127 | 0.97 | |
| 3_Y | 7_V | 1.113 | 0.96 | |
| 16_N | 71_S | 1.112 | 0.96 | |
| 63_C | 106_C | 1.107 | 0.96 | |
| 119_A | 122_K | 1.099 | 0.96 | |
| 17_V | 60_T | 1.069 | 0.95 | |
| 15_R | 71_S | 1.042 | 0.94 | |
| 84_E | 87_A | 1.035 | 0.94 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3lvlA | 1 | 1 | 100 | 0.028 | Contact Map | 0.821 |
| 2z7eA | 3 | 0.9688 | 100 | 0.046 | Contact Map | 0.906 |
| 4eb5C | 2 | 0.9609 | 100 | 0.049 | Contact Map | 0.87 |
| 1su0B | 1 | 0.9609 | 100 | 0.078 | Contact Map | 0.865 |
| 1xjsA | 1 | 0.9375 | 100 | 0.083 | Contact Map | 0.654 |
| 2qq4A | 10 | 0.8984 | 100 | 0.109 | Contact Map | 0.914 |
| 3g0mA | 1 | 0.875 | 96.7 | 0.812 | Contact Map | 0.515 |
| 1ni7A | 1 | 0.8906 | 78.6 | 0.881 | Contact Map | 0.446 |
| 4lw4C | 2 | 0.8672 | 74.9 | 0.884 | Contact Map | 0.457 |
| 1wloA | 1 | 0.875 | 64.1 | 0.893 | Contact Map | 0.565 |
Sequence Conservation (Image Generated using WebLogo v3)