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OPENSEQ.org

RPOE - WCAB
UniProt: P0AGB6 - P0ACC9
Length: 353
Sequences: 206
Seq/Len: 0.62
I_Prob: 0.00

RPOE - RNA polymerase sigma-E factor
Paralog alert: 0.65 [within 20: 0.13] - ratio of genomes with paralogs
Cluster includes: FECI RPOE
WCAB - Putative colanic acid biosynthesis acetyltransferase WcaB
Paralog alert: 0.33 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: WCAB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
14_V 84_V 1.55 0.00
160_A 154_E 1.54 0.00
140_E 154_E 1.43 0.00
160_A 116_E 1.22 0.00
5_L 34_N 1.14 0.00
20_K 160_V 1.14 0.00
164_D 138_G 1.10 0.00
186_Q 123_I 1.09 0.00
15_Q 127_I 1.07 0.00
160_A 118_G 1.06 0.00
160_A 69_R 1.04 0.00
18_D 117_L 1.03 0.00
15_Q 37_N 1.00 0.00
161_A 128_T 0.96 0.00
136_E 24_A 0.95 0.00
143_R 84_V 0.95 0.00
10_L 112_G 0.93 0.00
24_L 92_I 0.91 0.00
154_L 135_V 0.90 0.00
101_I 116_E 0.90 0.00
160_A 19_L 0.88 0.00
14_V 37_N 0.88 0.00
10_L 131_N 0.88 0.00
72_T 105_N 0.88 0.00
140_E 135_V 0.88 0.00
140_E 18_V 0.86 0.00
143_R 69_R 0.86 0.00
10_L 129_L 0.86 0.00
9_V 113_N 0.85 0.00
34_A 139_S 0.85 0.00
17_G 65_T 0.85 0.00
22_F 21_Y 0.85 0.00
14_V 118_G 0.85 0.00
109_G 48_Y 0.84 0.00
115_I 129_L 0.84 0.00
50_V 154_E 0.84 0.00
181_I 79_V 0.83 0.00
60_A 138_G 0.83 0.00
154_L 113_N 0.82 0.00
24_L 36_L 0.82 0.00
164_D 143_D 0.82 0.00
50_V 66_I 0.82 0.00
152_D 118_G 0.82 0.00
155_S 86_A 0.82 0.00
21_A 79_V 0.81 0.00
19_Q 154_E 0.80 0.00
164_D 69_R 0.80 0.00
129_Q 138_G 0.78 0.00
5_L 37_N 0.78 0.00
122_M 70_F 0.78 0.00
14_V 126_D 0.78 0.00
107_E 35_V 0.78 0.00
12_E 36_L 0.78 0.00
53_A 80_I 0.78 0.00
122_M 129_L 0.77 0.00
61_L 117_L 0.77 0.00
107_E 31_R 0.77 0.00
186_Q 85_V 0.77 0.00
84_N 147_D 0.77 0.00
185_V 160_V 0.77 0.00
160_A 127_I 0.77 0.00
129_Q 119_A 0.76 0.00
13_R 89_D 0.76 0.00
22_F 120_N 0.76 0.00
23_N 131_N 0.76 0.00
158_E 20_A 0.76 0.00
162_I 70_F 0.75 0.00
74_L 151_V 0.75 0.00
22_F 86_A 0.74 0.00
182_D 84_V 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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