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OPENSEQ.org
NUOK - NUOL
UniProt: P0AFE4 - P33607
Length: 713
Sequences: 2461
Seq/Len: 3.51
I_Prob: 0.24
NUOK - NADH-quinone oxidoreductase subunit K
Paralog alert: 0.08 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: NUOK 		NUOL - NADH-quinone oxidoreductase subunit L
Paralog alert: 0.33 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: HYCC HYFB HYFD HYFF NUOL NUOM NUON
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3rkoLB:MC:ND:KGContact Map
4he8LF:MG:NI:KEContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
73_A 102_Y 1.25 0.24
29_L 115_R 1.02 0.12
78_A 524_N 1.01 0.12
79_L 122_L 0.99 0.11
6_H 331_A 0.98 0.11
66_I 141_L 0.95 0.10
19_L 286_V 0.95 0.10
26_R 400_D 0.95 0.10
45_A 99_I 0.95 0.10
74_S 99_I 0.94 0.10
39_I 460_L 0.94 0.09
21_G 152_L 0.93 0.09
99_R 587_E 0.92 0.09
44_L 99_I 0.92 0.09
5_Q 48_I 0.92 0.09
74_S 197_F 0.90 0.08
68_L 295_G 0.90 0.08
69_A 223_L 0.89 0.08
2_I 5_A 0.89 0.08
65_A 16_V 0.89 0.08
29_L 542_D 0.88 0.08
79_L 423_F 0.87 0.07
34_G 266_I 0.87 0.07
98_M 582_G 0.87 0.07
63_I 128_V 0.87 0.07
38_M 594_Y 0.86 0.07
3_P 8_I 0.86 0.07
21_G 135_N 0.86 0.07
5_Q 33_V 0.86 0.07
83_L 234_P 0.84 0.07
29_L 304_I 0.84 0.07
46_F 266_I 0.84 0.07
40_N 308_L 0.84 0.07
38_M 6_L 0.84 0.07
78_A 67_W 0.84 0.06
69_A 222_L 0.83 0.06
80_L 130_L 0.83 0.06
68_L 297_A 0.83 0.06
7_G 462_I 0.83 0.06
73_A 133_A 0.83 0.06
5_Q 16_V 0.82 0.06
83_L 569_M 0.82 0.06
68_L 378_C 0.82 0.06
84_H 64_L 0.81 0.06
18_G 370_K 0.81 0.06
96_S 349_S 0.81 0.06
70_A 100_H 0.81 0.06
38_M 148_L 0.81 0.06
2_I 20_F 0.81 0.06
43_A 384_A 0.81 0.06
74_S 287_G 0.79 0.05
40_N 414_L 0.79 0.05
35_L 301_Q 0.79 0.05
75_I 375_V 0.78 0.05
83_L 126_S 0.78 0.05
31_M 77_F 0.77 0.05
76_G 81_L 0.77 0.05
30_F 173_V 0.77 0.05
73_A 180_F 0.77 0.05
32_L 269_T 0.77 0.05
62_Y 550_V 0.77 0.05
63_I 31_A 0.77 0.05
19_L 413_N 0.76 0.05
31_M 129_V 0.76 0.05
63_I 117_F 0.76 0.05
35_L 199_E 0.76 0.05
73_A 349_S 0.75 0.05
90_L 96_G 0.75 0.05
11_A 421_G 0.75 0.04
65_A 81_L 0.75 0.04
81_L 140_Y 0.75 0.04
78_A 185_L 0.75 0.04
26_R 439_G 0.74 0.04
38_M 285_I 0.74 0.04
99_R 427_L 0.74 0.04
66_I 298_A 0.74 0.04
100_G 570_N 0.74 0.04
69_A 237_T 0.74 0.04
17_L 536_Y 0.74 0.04
5_Q 4_L 0.73 0.04
74_S 88_M 0.73 0.04
58_G 589_G 0.73 0.04
64_L 103_A 0.73 0.04
3_P 15_F 0.73 0.04
81_L 113_Y 0.73 0.04
90_L 34_G 0.73 0.04
13_I 218_A 0.73 0.04
23_V 588_N 0.73 0.04
17_L 403_L 0.73 0.04
5_Q 17_L 0.73 0.04
69_A 352_V 0.72 0.04
17_L 289_V 0.72 0.04
82_Q 488_G 0.72 0.04
25_R 358_H 0.72 0.04
66_I 321_L 0.72 0.04
14_L 370_K 0.72 0.04
15_F 505_I 0.71 0.04
6_H 606_L 0.71 0.04
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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