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OPENSEQ.org
NUOK - NUON
UniProt: P0AFE4 - P0AFF0
Length: 585
Sequences: 1018
Seq/Len: 1.99
I_Prob: 0.05
NUOK - NADH-quinone oxidoreductase subunit K
Paralog alert: 0.08 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: NUOK 		NUON - NADH-quinone oxidoreductase subunit N
Paralog alert: 0.84 [within 20: 0.59] - ratio of genomes with paralogs
Cluster includes: HYCC HYFB HYFD HYFF NUOL NUOM NUON
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3rkoND:MC:LB:KGContact Map
4he8LF:MG:NI:KEContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
17_L 275_I 1.27 0.05
45_A 87_T 1.20 0.04
98_M 387_P 1.03 0.02
40_N 258_F 1.00 0.02
21_G 124_H 0.96 0.02
78_A 158_K 0.95 0.02
100_G 322_S 0.95 0.02
39_I 209_L 0.95 0.02
60_V 469_V 0.94 0.02
80_L 312_A 0.93 0.02
45_A 127_S 0.92 0.02
19_L 186_F 0.91 0.02
90_L 113_A 0.91 0.02
38_M 73_A 0.91 0.02
9_I 288_A 0.90 0.01
80_L 130_L 0.89 0.01
84_H 453_G 0.88 0.01
16_V 262_P 0.86 0.01
42_S 203_L 0.86 0.01
11_A 66_L 0.86 0.01
29_L 266_S 0.86 0.01
7_G 163_S 0.86 0.01
85_R 346_L 0.85 0.01
73_A 414_V 0.85 0.01
65_A 67_M 0.85 0.01
79_L 312_A 0.85 0.01
43_A 129_F 0.85 0.01
18_G 285_N 0.85 0.01
40_N 222_P 0.84 0.01
6_H 326_V 0.84 0.01
9_I 402_G 0.84 0.01
66_I 103_D 0.84 0.01
35_L 291_Q 0.84 0.01
78_A 298_L 0.84 0.01
73_A 162_L 0.83 0.01
64_L 367_W 0.83 0.01
47_V 465_L 0.81 0.01
25_R 343_V 0.81 0.01
60_V 390_L 0.81 0.01
8_L 122_A 0.80 0.01
10_L 172_F 0.80 0.01
79_L 189_L 0.80 0.01
10_L 327_G 0.80 0.01
84_H 258_F 0.80 0.01
85_R 270_R 0.80 0.01
46_F 354_P 0.80 0.01
45_A 110_L 0.79 0.01
52_Y 253_V 0.79 0.01
68_L 445_P 0.79 0.01
47_V 402_G 0.79 0.01
47_V 156_S 0.79 0.01
60_V 177_V 0.78 0.01
71_A 228_P 0.78 0.01
67_S 312_A 0.78 0.01
64_L 375_V 0.78 0.01
60_V 459_I 0.78 0.01
34_G 467_L 0.78 0.01
84_H 117_I 0.77 0.01
63_I 163_S 0.77 0.01
76_G 69_V 0.77 0.01
92_I 420_I 0.76 0.01
20_T 125_L 0.76 0.01
33_I 137_L 0.76 0.01
93_D 90_F 0.76 0.01
92_I 296_R 0.76 0.01
42_S 371_I 0.75 0.01
41_A 276_I 0.75 0.01
98_M 255_M 0.75 0.01
10_L 83_A 0.75 0.01
68_L 294_I 0.75 0.01
22_L 121_N 0.75 0.01
62_Y 221_V 0.74 0.01
83_L 222_P 0.74 0.01
43_A 130_L 0.74 0.01
75_I 274_A 0.74 0.01
25_R 422_L 0.74 0.01
33_I 172_F 0.74 0.01
7_G 385_G 0.74 0.01
96_S 69_V 0.73 0.01
34_G 405_A 0.73 0.01
29_L 287_M 0.73 0.01
48_V 171_L 0.73 0.01
50_G 380_M 0.73 0.01
17_L 147_F 0.73 0.01
34_G 457_V 0.72 0.01
89_N 323_M 0.72 0.01
41_A 269_I 0.72 0.01
28_L 73_A 0.72 0.01
86_R 225_L 0.72 0.01
40_N 274_A 0.72 0.01
92_I 122_A 0.72 0.01
40_N 410_L 0.72 0.01
34_G 78_G 0.71 0.01
98_M 249_A 0.71 0.01
56_T 462_L 0.71 0.01
67_S 105_F 0.71 0.01
16_V 115_G 0.71 0.01
47_V 403_V 0.71 0.01
82_Q 285_N 0.70 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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