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OPENSEQ.org
NUOK - NUOM
UniProt: P0AFE4 - P0AFE8
Length: 609
Sequences: 2153
Seq/Len: 3.79
I_Prob: 0.60
NUOK - NADH-quinone oxidoreductase subunit K
Paralog alert: 0.08 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: NUOK 		NUOM - NADH-quinone oxidoreductase subunit M
Paralog alert: 0.74 [within 20: 0.56] - ratio of genomes with paralogs
Cluster includes: HYCC HYFB HYFD HYFF NUOL NUOM NUON
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3rkoMC:LB:ND:KGContact Map
4he8LF:MG:NI:KEContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
43_A 116_F 1.38 0.60
65_A 282_A 1.27 0.50
80_L 306_F 1.12 0.35
5_Q 46_L 1.11 0.35
58_G 351_S 1.06 0.31
67_S 329_A 1.01 0.26
41_A 293_L 1.00 0.25
69_A 414_S 0.98 0.24
29_L 116_F 0.97 0.23
51_S 371_M 0.97 0.23
65_A 140_F 0.96 0.23
54_G 477_L 0.95 0.22
57_D 153_L 0.95 0.22
21_G 135_D 0.94 0.20
49_A 130_V 0.94 0.20
73_A 104_C 0.93 0.20
63_I 422_T 0.92 0.19
14_L 287_A 0.91 0.19
26_R 302_A 0.91 0.18
50_G 371_M 0.90 0.18
35_L 203_W 0.86 0.15
89_N 220_E 0.86 0.15
54_G 392_A 0.85 0.15
79_L 330_I 0.85 0.15
5_Q 15_F 0.85 0.15
52_Y 130_V 0.84 0.14
50_G 379_S 0.84 0.14
17_L 190_L 0.84 0.14
31_M 441_H 0.84 0.14
5_Q 47_W 0.83 0.14
79_L 118_L 0.82 0.13
64_L 125_G 0.82 0.13
5_Q 66_E 0.82 0.13
69_A 95_G 0.82 0.13
73_A 184_V 0.81 0.13
79_L 180_A 0.81 0.13
38_M 148_V 0.81 0.13
29_L 113_Q 0.80 0.12
15_F 100_L 0.80 0.12
55_Q 414_S 0.80 0.12
54_G 125_G 0.80 0.12
40_N 232_A 0.79 0.12
5_Q 42_L 0.79 0.12
23_V 449_K 0.79 0.12
3_P 7_I 0.79 0.12
9_I 45_Q 0.79 0.11
60_V 69_M 0.78 0.11
79_L 222_L 0.78 0.11
17_L 423_V 0.78 0.11
74_S 258_D 0.78 0.11
18_G 86_L 0.78 0.11
89_N 153_L 0.77 0.11
50_G 86_L 0.77 0.11
61_M 148_V 0.77 0.11
62_Y 238_V 0.77 0.11
80_L 278_L 0.77 0.11
58_G 343_I 0.76 0.10
35_L 16_L 0.76 0.10
45_A 188_A 0.76 0.10
7_G 178_T 0.76 0.10
31_M 189_I 0.76 0.10
44_L 368_T 0.75 0.10
5_Q 72_I 0.75 0.10
54_G 351_S 0.75 0.10
46_F 469_L 0.75 0.10
58_G 209_E 0.75 0.10
98_M 41_A 0.75 0.10
10_L 27_V 0.75 0.10
61_M 199_A 0.74 0.09
99_R 472_V 0.74 0.09
2_I 65_S 0.74 0.09
19_L 286_F 0.74 0.09
16_V 423_V 0.74 0.09
23_V 457_L 0.73 0.09
18_G 456_E 0.73 0.09
88_Q 41_A 0.73 0.09
6_H 176_I 0.73 0.09
9_I 66_E 0.73 0.09
55_Q 277_P 0.73 0.09
54_G 471_L 0.72 0.09
88_Q 19_Q 0.72 0.09
18_G 329_A 0.72 0.09
18_G 425_S 0.72 0.09
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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