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OPENSEQ.org

NUOJ - NUOL
UniProt: P0AFE0 - P33607
Length: 797
Sequences: 1000
Seq/Len: 1.28
I_Prob: 0.00

NUOJ - NADH-quinone oxidoreductase subunit J
Paralog alert: 0.06 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: NUOJ
NUOL - NADH-quinone oxidoreductase subunit L
Paralog alert: 0.33 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: HYCC HYFB HYFD HYFF NUOL NUOM NUON
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3rkoLB:MC:ND:JFContact Map
4he8LF:MG:NI:JDContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
58_V 385_A 1.25 0.00
129_V 331_A 1.19 0.00
25_P 260_T 1.13 0.00
62_A 382_G 1.12 0.00
74_L 260_T 1.10 0.00
57_I 552_P 1.09 0.00
74_L 359_E 1.08 0.00
70_V 260_T 1.08 0.00
9_G 529_R 1.08 0.00
145_S 430_F 1.08 0.00
52_G 264_Y 1.06 0.00
154_V 242_A 1.05 0.00
54_L 355_A 1.04 0.00
29_L 237_T 1.02 0.00
29_L 125_A 1.02 0.00
49_Y 99_I 1.00 0.00
21_T 306_R 0.99 0.00
51_A 133_A 0.98 0.00
156_F 236_Q 0.98 0.00
9_G 584_L 0.97 0.00
7_I 420_V 0.96 0.00
33_I 134_D 0.94 0.00
99_L 101_M 0.94 0.00
141_V 328_W 0.93 0.00
140_A 584_L 0.92 0.00
41_G 148_L 0.91 0.00
159_G 497_S 0.91 0.00
52_G 240_A 0.90 0.00
58_V 253_I 0.90 0.00
133_L 591_L 0.90 0.00
32_L 94_G 0.89 0.00
57_I 320_F 0.88 0.00
160_R 299_L 0.87 0.00
63_I 45_T 0.87 0.00
143_L 33_V 0.87 0.00
31_Y 331_A 0.86 0.00
58_V 386_L 0.86 0.00
67_F 260_T 0.86 0.00
100_S 20_F 0.85 0.00
36_L 124_I 0.85 0.00
154_V 354_L 0.85 0.00
60_A 99_I 0.85 0.00
142_E 234_P 0.85 0.00
129_V 10_L 0.84 0.00
154_V 453_H 0.84 0.00
19_V 38_V 0.83 0.00
8_C 355_A 0.83 0.00
145_S 86_L 0.83 0.00
41_G 379_F 0.82 0.00
64_M 99_I 0.82 0.00
28_A 297_A 0.82 0.00
133_L 299_L 0.81 0.00
145_S 140_Y 0.81 0.00
160_R 313_M 0.81 0.00
142_E 171_F 0.81 0.00
8_C 85_S 0.80 0.00
142_E 337_T 0.80 0.00
71_V 394_A 0.80 0.00
153_V 276_T 0.80 0.00
57_I 188_L 0.80 0.00
156_F 121_N 0.80 0.00
52_G 197_F 0.80 0.00
133_L 196_N 0.80 0.00
55_E 592_R 0.79 0.00
75_N 550_V 0.79 0.00
129_V 511_L 0.79 0.00
76_L 231_A 0.79 0.00
7_I 603_V 0.79 0.00
159_G 297_A 0.79 0.00
58_V 180_F 0.79 0.00
153_V 507_L 0.79 0.00
99_L 272_L 0.78 0.00
156_F 167_A 0.78 0.00
74_L 270_H 0.78 0.00
13_I 273_F 0.78 0.00
144_A 103_A 0.78 0.00
101_A 607_A 0.78 0.00
36_L 301_Q 0.78 0.00
35_S 362_I 0.78 0.00
124_I 174_T 0.78 0.00
76_L 142_G 0.78 0.00
91_Q 596_A 0.77 0.00
150_A 174_T 0.77 0.00
19_V 219_T 0.77 0.00
77_G 596_A 0.77 0.00
63_I 430_F 0.77 0.00
65_V 19_A 0.77 0.00
56_I 157_Y 0.77 0.00
64_M 121_N 0.77 0.00
36_L 353_I 0.77 0.00
154_V 403_L 0.77 0.00
153_V 60_Y 0.77 0.00
29_L 378_C 0.77 0.00
41_G 295_G 0.77 0.00
35_S 313_M 0.76 0.00
99_L 36_G 0.76 0.00
108_V 604_V 0.76 0.00
58_V 293_L 0.76 0.00
58_V 337_T 0.76 0.00
151_G 394_A 0.76 0.00
30_L 84_L 0.75 0.00
49_Y 121_N 0.75 0.00
67_F 100_H 0.75 0.00
153_V 376_Y 0.75 0.00
64_M 117_F 0.75 0.00
57_I 145_G 0.75 0.00
36_L 593_W 0.75 0.00
27_H 174_T 0.75 0.00
22_H 116_F 0.75 0.00
98_I 603_V 0.75 0.00
51_A 456_P 0.75 0.00
88_L 283_V 0.75 0.00
29_L 236_Q 0.75 0.00
30_L 152_L 0.75 0.00
152_L 136_L 0.74 0.00
36_L 361_N 0.74 0.00
94_I 188_L 0.74 0.00
74_L 592_R 0.74 0.00
42_V 335_L 0.74 0.00
13_I 548_V 0.74 0.00
41_G 223_L 0.74 0.00
13_I 466_F 0.74 0.00
37_L 157_Y 0.74 0.00
124_I 118_A 0.74 0.00
60_A 379_F 0.74 0.00
80_E 426_S 0.73 0.00
47_G 157_Y 0.73 0.00
57_I 222_L 0.73 0.00
36_L 592_R 0.73 0.00
30_L 179_V 0.73 0.00
43_F 242_A 0.73 0.00
67_F 125_A 0.73 0.00
12_A 264_Y 0.73 0.00
74_L 174_T 0.73 0.00
64_M 234_P 0.73 0.00
88_L 306_R 0.73 0.00
121_G 459_V 0.73 0.00
146_M 415_M 0.72 0.00
33_I 42_A 0.72 0.00
23_T 266_I 0.72 0.00
44_F 606_L 0.72 0.00
13_I 461_L 0.72 0.00
55_E 388_A 0.72 0.00
63_I 393_T 0.72 0.00
147_L 96_G 0.72 0.00
36_L 475_L 0.72 0.00
141_V 392_V 0.72 0.00
74_L 145_G 0.72 0.00
58_V 179_V 0.72 0.00
141_V 49_G 0.72 0.00
53_A 77_F 0.72 0.00
43_F 308_L 0.72 0.00
39_I 349_S 0.72 0.00
92_V 202_E 0.71 0.00
126_A 280_L 0.71 0.00
3_F 85_S 0.71 0.00
7_I 572_P 0.71 0.00
66_L 241_D 0.71 0.00
49_Y 124_I 0.71 0.00
147_L 308_L 0.71 0.00
40_S 364_K 0.71 0.00
153_V 264_Y 0.71 0.00
125_S 298_A 0.71 0.00
21_T 41_A 0.71 0.00
158_V 126_S 0.71 0.00
43_F 294_A 0.71 0.00
156_F 316_I 0.70 0.00
25_P 100_H 0.70 0.00
17_L 22_R 0.70 0.00
64_M 260_T 0.70 0.00
145_S 167_A 0.70 0.00
135_G 352_V 0.70 0.00
35_S 126_S 0.70 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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