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OPENSEQ.org
NUOA - NUOH
UniProt: P0AFC3 - P0AFD4
Length: 472
Sequences: 738
Seq/Len: 1.72
I_Prob: 0.43
NUOA - NADH-quinone oxidoreductase subunit A
Paralog alert: 0.07 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: NUOA 		NUOH - NADH-quinone oxidoreductase subunit H
Paralog alert: 0.24 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: HYCD HYFC NUOH
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
4he8HC:ABContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
100_F 318_A 1.56 0.43
103_A 313_L 1.56 0.43
103_A 165_M 1.54 0.41
36_F 20_V 1.42 0.32
104_A 314_L 1.39 0.30
82_A 120_L 1.35 0.27
24_I 92_T 1.32 0.25
24_I 88_M 1.31 0.24
19_F 146_A 1.27 0.22
76_V 195_G 1.23 0.20
68_F 93_S 1.23 0.19
46_K 71_E 1.23 0.19
47_N 73_W 1.21 0.18
76_V 192_Q 1.16 0.15
69_Y 217_A 1.14 0.15
111_L 51_R 1.13 0.14
27_C 88_M 1.13 0.14
34_G 235_G 1.11 0.13
83_L 125_L 1.10 0.13
60_A 138_N 1.10 0.13
96_G 266_P 1.08 0.12
30_M 64_M 1.07 0.12
100_F 188_N 1.07 0.12
92_I 169_A 1.05 0.11
16_F 112_L 1.05 0.11
49_P 243_I 1.03 0.10
60_A 140_K 1.03 0.10
26_L 22_L 1.03 0.10
22_V 15_I 1.02 0.10
96_G 300_F 1.02 0.10
50_F 58_L 1.02 0.10
118_V 303_K 1.01 0.09
86_F 237_F 0.99 0.09
68_F 20_V 0.99 0.09
68_F 128_Y 0.98 0.08
23_A 217_A 0.97 0.08
97_W 277_F 0.96 0.08
14_W 41_G 0.95 0.07
50_F 151_A 0.94 0.07
92_I 317_A 0.94 0.07
121_G 54_W 0.93 0.07
30_M 232_M 0.93 0.07
36_F 115_G 0.93 0.07
25_G 277_F 0.93 0.07
71_V 294_Y 0.92 0.07
20_L 96_L 0.91 0.06
72_A 296_Q 0.91 0.06
99_G 128_Y 0.90 0.06
21_I 275_T 0.89 0.06
38_G 69_F 0.88 0.06
21_I 264_L 0.88 0.06
50_F 35_G 0.88 0.05
33_G 250_A 0.88 0.05
37_L 271_F 0.87 0.05
18_I 14_T 0.87 0.05
73_M 294_Y 0.87 0.05
99_G 251_L 0.86 0.05
85_L 309_T 0.86 0.05
33_G 65_I 0.86 0.05
85_L 313_L 0.85 0.05
33_G 154_L 0.85 0.05
12_H 22_L 0.85 0.05
113_G 205_A 0.85 0.05
74_F 290_P 0.85 0.05
22_V 84_T 0.85 0.05
71_V 150_S 0.84 0.05
25_G 14_T 0.84 0.05
36_F 190_I 0.84 0.05
114_L 310_L 0.84 0.05
63_R 267_P 0.84 0.05
124_D 303_K 0.84 0.05
56_S 222_A 0.84 0.05
58_G 140_K 0.84 0.05
33_G 68_F 0.84 0.05
60_A 202_A 0.84 0.05
100_F 306_L 0.83 0.05
72_A 87_P 0.83 0.04
68_F 127_V 0.83 0.04
44_R 255_L 0.83 0.04
24_I 21_I 0.83 0.04
36_F 80_R 0.83 0.04
117_L 294_Y 0.83 0.04
107_I 314_L 0.82 0.04
36_F 182_S 0.82 0.04
32_V 65_I 0.82 0.04
93_R 171_A 0.82 0.04
108_F 74_I 0.82 0.04
33_G 91_F 0.81 0.04
98_V 264_L 0.81 0.04
95_S 313_L 0.81 0.04
99_G 83_F 0.81 0.04
86_F 41_G 0.81 0.04
38_G 235_G 0.81 0.04
115_V 109_V 0.81 0.04
126_T 289_L 0.81 0.04
40_R 234_F 0.80 0.04
103_A 94_L 0.79 0.04
73_M 159_F 0.79 0.04
111_L 173_S 0.79 0.04
52_S 309_T 0.79 0.04
124_D 132_F 0.79 0.04
71_V 128_Y 0.78 0.04
73_M 161_G 0.78 0.04
49_P 132_F 0.78 0.04
44_R 41_G 0.78 0.04
77_I 162_L 0.78 0.04
50_F 86_A 0.78 0.04
39_G 130_V 0.78 0.04
55_D 233_K 0.78 0.04
26_L 104_S 0.78 0.04
40_R 12_L 0.78 0.04
28_C 189_V 0.77 0.04
20_L 253_V 0.77 0.04
68_F 221_L 0.77 0.04
87_A 208_H 0.77 0.04
92_I 52_V 0.77 0.03
47_N 126_A 0.77 0.03
25_G 197_I 0.76 0.03
52_S 169_A 0.76 0.03
23_A 236_L 0.76 0.03
105_I 23_L 0.76 0.03
15_A 301_G 0.76 0.03
17_A 65_I 0.76 0.03
43_A 300_F 0.76 0.03
33_G 232_M 0.76 0.03
80_V 72_D 0.75 0.03
46_K 230_S 0.75 0.03
108_F 115_G 0.75 0.03
71_V 127_V 0.75 0.03
77_I 118_F 0.75 0.03
58_G 51_R 0.75 0.03
30_M 68_F 0.75 0.03
74_F 129_A 0.75 0.03
49_P 139_N 0.75 0.03
100_F 314_L 0.74 0.03
94_E 257_F 0.74 0.03
104_A 172_G 0.74 0.03
115_V 21_I 0.74 0.03
78_F 302_W 0.74 0.03
31_L 72_D 0.74 0.03
17_A 171_A 0.74 0.03
37_L 84_T 0.74 0.03
14_W 178_D 0.74 0.03
67_K 144_L 0.74 0.03
46_K 155_S 0.73 0.03
61_R 30_A 0.73 0.03
120_I 113_N 0.73 0.03
115_V 252_M 0.73 0.03
60_A 260_W 0.73 0.03
15_A 128_Y 0.73 0.03
90_T 129_A 0.73 0.03
101_V 163_S 0.73 0.03
60_A 188_N 0.73 0.03
76_V 301_G 0.73 0.03
69_Y 202_A 0.73 0.03
17_A 164_L 0.72 0.03
42_R 61_V 0.72 0.03
75_F 87_P 0.72 0.03
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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