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OPENSEQ.org

NSRR - TRML
UniProt: P0AF63 - P0AGJ7
Length: 298
Sequences: 306
Seq/Len: 1.10
I_Prob: 0.00

NSRR - HTH-type transcriptional repressor NsrR
Paralog alert: 0.62 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: ISCR NSRR
TRML - tRNA (cytidine(34)-2'-O)-methyltransferase
Paralog alert: 0.90 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: RLMB TRML
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
95_F 35_M 1.25 0.00
5_S 139_V 1.12 0.00
126_D 56_A 1.10 0.00
9_Y 101_P 1.09 0.00
14_L 120_I 1.09 0.00
116_L 17_N 1.09 0.00
90_N 3_N 1.07 0.00
126_D 135_N 1.07 0.00
66_R 48_G 1.04 0.00
125_A 61_H 1.02 0.00
17_M 139_V 1.00 0.00
73_A 144_A 0.99 0.00
52_A 24_N 0.96 0.00
54_Y 145_W 0.96 0.00
52_A 94_G 0.95 0.00
54_Y 120_I 0.94 0.00
9_Y 7_Y 0.94 0.00
48_Q 56_A 0.93 0.00
121_N 35_M 0.93 0.00
101_A 17_N 0.92 0.00
79_V 76_F 0.92 0.00
131_N 67_L 0.92 0.00
81_R 103_T 0.91 0.00
114_S 12_P 0.90 0.00
72_S 94_G 0.90 0.00
26_T 43_R 0.90 0.00
66_R 137_V 0.90 0.00
72_S 62_D 0.89 0.00
53_G 36_G 0.89 0.00
52_A 93_D 0.89 0.00
17_M 47_A 0.88 0.00
88_L 82_G 0.88 0.00
112_V 101_P 0.88 0.00
9_Y 79_T 0.87 0.00
52_A 36_G 0.87 0.00
114_S 41_D 0.86 0.00
36_G 52_H 0.85 0.00
30_E 98_M 0.85 0.00
126_D 4_I 0.85 0.00
131_N 71_N 0.84 0.00
116_L 120_I 0.83 0.00
9_Y 70_E 0.83 0.00
101_A 30_H 0.83 0.00
58_V 25_T 0.83 0.00
130_E 12_P 0.82 0.00
53_G 109_S 0.82 0.00
78_D 2_L 0.82 0.00
23_G 64_R 0.82 0.00
22_E 146_R 0.82 0.00
53_G 91_Y 0.82 0.00
78_D 45_R 0.81 0.00
79_V 60_H 0.81 0.00
92_S 2_L 0.81 0.00
17_M 42_K 0.81 0.00
128_V 44_L 0.81 0.00
26_T 71_N 0.80 0.00
23_G 30_H 0.79 0.00
112_V 85_A 0.79 0.00
90_N 67_L 0.79 0.00
113_Q 88_A 0.79 0.00
78_D 56_A 0.78 0.00
66_R 133_L 0.78 0.00
126_D 139_V 0.78 0.00
27_S 112_D 0.78 0.00
72_S 89_V 0.77 0.00
79_V 42_K 0.77 0.00
4_T 89_V 0.77 0.00
22_E 121_R 0.77 0.00
100_P 76_F 0.77 0.00
116_L 47_A 0.77 0.00
78_D 12_P 0.77 0.00
71_A 37_F 0.77 0.00
69_K 85_A 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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