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OPENSEQ.org

FDOI - HYBD
UniProt: P0AEL0 - P37182
Length: 375
Sequences: 210
Seq/Len: 0.60
I_Prob: 0.00

FDOI - Formate dehydrogenase, cytochrome b556(fdo) subunit
Paralog alert: 0.57 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: CYBH FDNI FDOI
HYBD - Hydrogenase 2 maturation protease
Paralog alert: 0.59 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: HYAD HYBD HYCI
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
70_I 38_I 1.33 0.00
134_R 64_I 1.30 0.00
30_V 64_I 1.28 0.00
72_F 80_E 1.24 0.00
30_V 151_E 1.22 0.00
107_Y 94_Q 1.21 0.00
22_A 111_P 1.20 0.00
179_T 45_G 1.19 0.00
16_I 136_A 1.18 0.00
182_V 5_V 1.15 0.00
120_I 154_V 1.15 0.00
20_I 143_E 1.14 0.00
66_A 52_M 1.12 0.00
149_A 16_E 1.10 0.00
152_L 54_N 1.10 0.00
181_M 52_M 1.07 0.00
172_L 106_F 1.07 0.00
127_V 131_T 1.07 0.00
181_M 100_V 1.06 0.00
181_M 84_A 1.05 0.00
127_V 5_V 1.04 0.00
35_F 39_L 1.04 0.00
96_V 78_R 1.03 0.00
162_V 8_V 1.02 0.00
63_V 28_Q 1.02 0.00
21_T 96_G 1.01 0.00
120_I 39_L 1.01 0.00
88_W 5_V 1.01 0.00
127_V 32_L 1.01 0.00
148_F 64_I 1.01 0.00
59_F 90_I 0.99 0.00
158_V 8_V 0.99 0.00
72_F 5_V 0.99 0.00
179_T 96_G 0.99 0.00
24_C 31_I 0.98 0.00
14_E 46_M 0.97 0.00
168_I 125_E 0.96 0.00
142_S 53_A 0.95 0.00
180_A 27_E 0.95 0.00
171_A 134_V 0.95 0.00
144_P 32_L 0.94 0.00
25_F 98_A 0.94 0.00
64_M 90_I 0.94 0.00
110_G 8_V 0.93 0.00
128_S 8_V 0.93 0.00
147_R 75_M 0.93 0.00
107_Y 75_M 0.92 0.00
58_P 127_H 0.92 0.00
111_Q 98_A 0.92 0.00
164_I 20_V 0.92 0.00
142_S 59_I 0.91 0.00
181_M 107_T 0.91 0.00
124_L 124_L 0.91 0.00
61_G 109_E 0.91 0.00
16_I 38_I 0.91 0.00
176_G 145_V 0.91 0.00
72_F 31_I 0.90 0.00
122_L 112_K 0.90 0.00
23_F 133_T 0.90 0.00
145_V 103_A 0.90 0.00
20_I 132_P 0.90 0.00
126_L 107_T 0.90 0.00
181_M 139_E 0.90 0.00
164_I 99_D 0.90 0.00
69_I 38_I 0.89 0.00
73_F 127_H 0.89 0.00
62_V 74_M 0.89 0.00
130_V 52_M 0.89 0.00
73_F 16_E 0.89 0.00
166_V 125_E 0.88 0.00
48_G 99_D 0.88 0.00
20_I 37_E 0.88 0.00
158_V 16_E 0.87 0.00
33_L 55_R 0.87 0.00
92_I 106_F 0.86 0.00
123_V 136_A 0.86 0.00
76_W 38_I 0.86 0.00
102_G 72_G 0.86 0.00
97_V 5_V 0.86 0.00
121_F 57_H 0.86 0.00
180_A 5_V 0.86 0.00
96_V 152_S 0.86 0.00
180_A 131_T 0.86 0.00
31_S 3_I 0.86 0.00
93_R 28_Q 0.86 0.00
127_V 108_G 0.86 0.00
130_V 109_E 0.85 0.00
182_V 36_V 0.85 0.00
31_S 2_R 0.85 0.00
24_C 105_R 0.85 0.00
93_R 146_L 0.85 0.00
56_L 38_I 0.85 0.00
22_A 130_L 0.85 0.00
120_I 143_E 0.85 0.00
91_N 4_L 0.84 0.00
63_V 57_H 0.84 0.00
165_M 99_D 0.84 0.00
183_E 125_E 0.84 0.00
69_I 74_M 0.84 0.00
97_V 46_M 0.83 0.00
70_I 129_G 0.83 0.00
80_L 3_I 0.83 0.00
64_M 97_L 0.83 0.00
158_V 20_V 0.83 0.00
24_C 112_K 0.83 0.00
185_W 11_I 0.83 0.00
72_F 23_V 0.83 0.00
64_M 56_D 0.83 0.00
133_W 116_L 0.82 0.00
144_P 146_L 0.82 0.00
142_S 112_K 0.82 0.00
51_Q 13_L 0.82 0.00
121_F 38_I 0.82 0.00
30_V 160_E 0.82 0.00
30_V 25_A 0.82 0.00
20_I 159_R 0.82 0.00
115_F 61_A 0.82 0.00
142_S 129_G 0.82 0.00
16_I 134_V 0.82 0.00
47_M 154_V 0.82 0.00
160_L 147_A 0.81 0.00
115_F 128_I 0.81 0.00
157_A 86_F 0.81 0.00
44_M 154_V 0.81 0.00
60_V 38_I 0.81 0.00
185_W 126_P 0.81 0.00
171_A 38_I 0.81 0.00
172_L 103_A 0.81 0.00
40_F 82_V 0.81 0.00
44_M 64_I 0.81 0.00
78_H 94_Q 0.81 0.00
158_V 7_G 0.81 0.00
31_S 26_L 0.81 0.00
163_V 130_L 0.80 0.00
105_G 38_I 0.80 0.00
50_P 3_I 0.80 0.00
24_C 23_V 0.80 0.00
111_Q 45_G 0.80 0.00
29_A 16_E 0.80 0.00
37_F 28_Q 0.80 0.00
189_A 11_I 0.80 0.00
152_L 112_K 0.80 0.00
187_T 126_P 0.79 0.00
115_F 44_A 0.79 0.00
56_L 99_D 0.79 0.00
154_S 75_M 0.79 0.00
176_G 85_L 0.79 0.00
63_V 67_K 0.79 0.00
115_F 66_S 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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